Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer
about
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discoverySequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encodingStatistical aspects of discerning indel-type structural variation via DNA sequence alignmentFusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing dataMarsupial genome sequences: providing insight into evolution and diseasePEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing dataYeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion.THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing dataA sequence-based survey of the complex structural organization of tumor genomes.An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer.Second generation sequencing of the mesothelioma tumor genome.Challenges of sequencing human genomes.Designing deep sequencing experiments: detecting structural variation and estimating transcript abundanceMassively parallel sequencing approaches for characterization of structural variationDesign and validation issues in RNA-seq experiments.Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencingExpanding the computational toolbox for mining cancer genomes.An integrative probabilistic model for identification of structural variation in sequencing data.Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.The intra-S phase checkpoint protein Tof1 collaborates with the helicase Rrm3 and the F-box protein Dia2 to maintain genome stability in Saccharomyces cerevisiae.Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes.Detecting structural variations in the human genome using next generation sequencing.Transcriptional consequences of genomic structural aberrations in breast cancer.Oncogenic gene fusions in epithelial carcinomasCancer gene discovery in mouse and man.Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.Optimizing PCR assays for DNA-based cancer diagnosticsInferring the global structure of chromosomes from structural variations.Simultaneous structural variation discovery among multiple paired-end sequenced genomes.Assembly and diploid architecture of an individual human genome via single-molecule technologies.Integrated sequence and expression analysis of ovarian cancer structural variants underscores the importance of gene fusion regulationnFuse: discovery of complex genomic rearrangements in cancer using high-throughput sequencingReprever: resolving low-copy duplicated sequences using template driven assembly.Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectivesA geometric approach for classification and comparison of structural variantsSite-specific Genome Editing in PBMCs With PLGA Nanoparticle-delivered PNAs Confers HIV-1 Resistance in Humanized Mice.Computational methods for discovering structural variation with next-generation sequencing.Application of second-generation sequencing to cancer genomics.Evaluation of next-generation sequencing software in mapping and assembly.
P2860
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P2860
Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer
description
2008 nî lūn-bûn
@nan
2008 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Evaluation of paired-end seque ...... enome rearrangements in cancer
@ast
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en-gb
Evaluation of paired-end seque ...... enome rearrangements in cancer
@nl
type
label
Evaluation of paired-end seque ...... enome rearrangements in cancer
@ast
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en-gb
Evaluation of paired-end seque ...... enome rearrangements in cancer
@nl
prefLabel
Evaluation of paired-end seque ...... enome rearrangements in cancer
@ast
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en-gb
Evaluation of paired-end seque ...... enome rearrangements in cancer
@nl
P2093
P2860
P1476
Evaluation of paired-end seque ...... enome rearrangements in cancer
@en
P2093
Ali Bashir
Benjamin J Raphael
Colin Collins
Stanislav Volik
P2860
P304
P356
10.1371/JOURNAL.PCBI.1000051
P407
P50
P577
2008-04-01T00:00:00Z