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RNAstructure: software for RNA secondary structure prediction and analysis

RNAstructure: software for RNA secondary structure prediction and analysis

http://www.wikidata.org/entity/Q24602642

about

A unique box in 28S rRNA is shared by the enigmatic insect order Zoraptera and Dictyoptera Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA Secondary structure models of 18S and 28S rRNAs of the true bugs based on complete rDNA sequences of Eurydema maracandica Oshanin, 1871 (Heteroptera, Pentatomidae)ViennaRNA Package 2.0 Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences Automated 3D structure composition for large RNAs HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome A Multicomponent Animal Virus Isolated from Mosquitoes Structure Prediction: New Insights into Decrypting Long Noncoding RNAs Computational analysis of noncoding RNAs Viral RNA switch mediates the dynamic control of flavivirus replicase recruitment by genome cyclization MIiSR: Molecular Interactions in Super-Resolution Imaging Enables the Analysis of Protein Interactions, Dynamics and Formation of Multi-protein Structures Single-Molecule Imaging Reveals that Argonaute Reshapes the Binding Properties of Its Nucleic Acid Guides Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq A small stem-loop structure of the Ebola virus trailer is essential for replication and interacts with heat-shock protein A8 Integrating chemical footprinting data into RNA secondary structure prediction Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation Secondary structure of a conserved domain in the intron of influenza A NS1 mRNA Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis Probing Xist RNA Structure in Cells Using Targeted Structure-Seq Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution Fossil record of stem groups employed in evaluating the chronogram of insects (Arthropoda: Hexapoda)MONSTER v1.1: a tool to extract and search for RNA non-branching structures Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures ITS polymorphisms shed light on hybrid evolution in apomictic plants: a case study on the Ranunculus auricomus complex RNA secondary structure analysis using RNAstructure Plastid DNA sequencing and nuclear SNP genotyping help resolve the puzzle of central American Platanus CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction Phylogenetic analysis and molecular evolution patterns in the MIR482-MIR1448 polycistron of Populus L SAVoR: a server for sequencing annotation and visualization of RNA structures Global or local? Predicting secondary structure and accessibility in mRNAs A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more FoldAtlas: a repository for genome-wide RNA structure probing data SHAPE analysis of small RNAs and riboswitches Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

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RNAstructure: software for RNA secondary structure prediction and analysis

http://www.wikidata.org/entity/Q24602642

description

2010 nî lūn-bûn

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2010 թուականին հրատարակուած գիտական յօդուած

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2010 թվականին հրատարակված գիտական հոդված

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2010年の論文

@ja

2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

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2010年论文

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name

RNAstructure: software for RNA secondary structure prediction and analysis

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RNAstructure: software for RNA secondary structure prediction and analysis

@en

RNAstructure: software for RNA secondary structure prediction and analysis

@nl

type

label

RNAstructure: software for RNA secondary structure prediction and analysis

@ast

RNAstructure: software for RNA secondary structure prediction and analysis

@en

RNAstructure: software for RNA secondary structure prediction and analysis

@nl

prefLabel

RNAstructure: software for RNA secondary structure prediction and analysis

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RNAstructure: software for RNA secondary structure prediction and analysis

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RNAstructure: software for RNA secondary structure prediction and analysis

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BMC Bioinformatics

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RNAstructure: software for RNA secondary structure prediction and analysis

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David H Mathews

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Jessica S Reuter

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P2860

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

Non–coding RNA genes and the modern RNA world

Architecture and secondary structure of an entire HIV-1 RNA genome

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

Predicting oligonucleotide affinity to nucleic acid targets.

Design of multistable RNA molecules

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

Fast and reliable prediction of noncoding RNAs

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

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