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Integrating chemical footprinting data into RNA secondary structure prediction

Integrating chemical footprinting data into RNA secondary structure prediction

http://www.wikidata.org/entity/Q28484429

about

Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution Bioinformatics of prokaryotic RNAs RNA folding with hard and soft constraints Computational analysis of RNA structures with chemical probing data.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.Data-directed RNA secondary structure prediction using probabilistic modeling.RNAiFold2T: Constraint Programming design of thermo-IRES switches.Computational modeling of RNA 3D structures, with the aid of experimental restraints.ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data Probing-directed identification of novel structured RNAs.Using RNA inverse folding to identify IRES-like structural subdomains.Computing the probability of RNA hairpin and multiloop formation.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.Toward a next-generation atlas of RNA secondary structure.Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions.Bridging the gap between in vitro and in vivo RNA folding.Magnesium-dependent folding of a picornavirus IRES element modulates RNA conformation and eIF4G interaction.Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements.RNA Thermodynamic Structural Entropy.Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structure SHAPE directed RNA folding.Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).Modeling RNA secondary structure folding ensembles using SHAPE mapping data.Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction.

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Integrating chemical footprinting data into RNA secondary structure prediction

http://www.wikidata.org/entity/Q28484429

description

2012 nî lūn-bûn

@nan

2012 թուականին հրատարակուած գիտական յօդուած

@hyw

2012 թվականին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Integrating chemical footprinting data into RNA secondary structure prediction

@ast

Integrating chemical footprinting data into RNA secondary structure prediction

@en

Integrating chemical footprinting data into RNA secondary structure prediction

@nl

type

label

Integrating chemical footprinting data into RNA secondary structure prediction

@ast

Integrating chemical footprinting data into RNA secondary structure prediction

@en

Integrating chemical footprinting data into RNA secondary structure prediction

@nl

prefLabel

Integrating chemical footprinting data into RNA secondary structure prediction

@ast

Integrating chemical footprinting data into RNA secondary structure prediction

@en

Integrating chemical footprinting data into RNA secondary structure prediction

@nl

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JOURNAL.PONE.0045160

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Integrating chemical footprinting data into RNA secondary structure prediction

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Ivan Dotu

http://www.w3.org/2001/XMLSchema#string

Jeffrey H Chuang

http://www.w3.org/2001/XMLSchema#string

Kourosh Zarringhalam

http://www.w3.org/2001/XMLSchema#string

Michelle M Meyer

http://www.w3.org/2001/XMLSchema#string

Peter Clote

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Mfold web server for nucleic acid folding and hybridization prediction

Sfold web server for statistical folding and rational design of nucleic acids

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

RNAstructure: software for RNA secondary structure prediction and analysis

Accurate SHAPE-directed RNA structure determination

Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

Structure and mechanism of a metal-sensing regulatory RNA

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e45160

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scholarly article

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1121100

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10.1371/JOURNAL.PONE.0045160

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23091593

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3473038

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