Empirical comparison of ab initio repeat finding programs - Wikidata - wikimedia - TriplyDB

Empirical comparison of ab initio repeat finding programs

Empirical comparison of ab initio repeat finding programs

http://www.wikidata.org/entity/Q24646360

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Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent Transposable element detection from whole genome sequence data Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata Complete Genome Sequence of Mycoplasma bovis Strain 08M.Considering transposable element diversification in de novo annotation approaches.Novel transposable elements from Anopheles gambiae.An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes MsDetector: toward a standard computational tool for DNA microsatellites detection Genome sequencing of Sporisorium scitamineum provides insights into the pathogenic mechanisms of sugarcane smut Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons.Global genome and transcriptome analyses of Magnaporthe oryzae epidemic isolate 98-06 uncover novel effectors and pathogenicity-related genes, revealing gene gain and lose dynamics in genome evolution.Unraveling adaptation of Pontibacter korlensis to radiation and infertility in desert through complete genome and comparative transcriptomic analysis.Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.A call for benchmarking transposable element annotation methods.phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.Draft Genome Sequence of Desulfitobacterium hafniense Strain DH, a Sulfate-Reducing Bacterium Isolated from Paddy Soils.Genome and Transcriptome Sequences Reveal the Specific Parasitism of the Nematophagous Purpureocillium lilacinum 36-1 High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research.Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea.A Complete and Accurate Ab Initio Repeat Finding Algorithm.Repbase Update, a database of repetitive elements in eukaryotic genomes.TRStalker: an efficient heuristic for finding fuzzy tandem repeats.Complete Genome Sequence of Mycoplasma capricolum subsp. capripneumoniae Strain zly1309F, Isolated from Endangered Tibetan Antelope.Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus Computational identification of Y-linked markers and genes in the grass carp genome by using a pool-and-sequence method.Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm.Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.Whole-Genome Sequences of Brucella melitensis Strain QY1, Isolated from Sheep in Gansu, China.A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching.Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche.Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1 Complete Genome Sequence of Highly Virulent Haemophilus parasuis Serotype 11 Strain SC1401.Whole-Genome Sequence of Streptococcus parauberis Strain SP-llh, Isolated from Cows with Mastitis in Western China.Detection of dispersed short tandem repeats using reversible jump Markov chain Monte Carlo PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.Comprehensively identifying and characterizing the missing gene sequences in human reference genome with integrated analytic approaches.Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop.Exhaustive computation of exact duplications via super and non-nested local maximal repeats.

P2860

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P2860

Empirical comparison of ab initio repeat finding programs

http://www.wikidata.org/entity/Q24646360

description

2008 nî lūn-bûn

@nan

2008 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2008 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2008年の論文

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2008年論文

@yue

2008年論文

@zh-hant

2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

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name

Empirical comparison of ab initio repeat finding programs

@ast

Empirical comparison of ab initio repeat finding programs

@en

Empirical comparison of ab initio repeat finding programs

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type

label

Empirical comparison of ab initio repeat finding programs

@ast

Empirical comparison of ab initio repeat finding programs

@en

Empirical comparison of ab initio repeat finding programs

@nl

prefLabel

Empirical comparison of ab initio repeat finding programs

@ast

Empirical comparison of ab initio repeat finding programs

@en

Empirical comparison of ab initio repeat finding programs

@nl

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Empirical comparison of ab initio repeat finding programs

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P2093

Susan Bridges

http://www.w3.org/2001/XMLSchema#string

Zenaida V Magbanua

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P2860

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands

Comparative genomics of emerging human ehrlichiosis agents

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite.

Rolling-circle transposons in eukaryotes

Multiple sequence alignment with the Clustal series of programs

A clustering method for repeat analysis in DNA sequences

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

Tracking Alu evolution in New World primates.

The small RNA profile during Drosophila melanogaster development

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2284-2294

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scholarly article

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1117397

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10.1093/NAR/GKN064

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7

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36

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Daniel G. Peterson

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2008-02-20T00:00:00Z

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5565191

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