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Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

http://www.wikidata.org/entity/Q27490892

about

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations A cornucopia of Helitrons shapes the maize genome Repetitive elements may comprise over two-thirds of the human genome Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies No Accumulation of Transposable Elements in Asexual Arthropods Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs Rolling-circle transposons catalyze genomic innovation in a mammalian lineage Transposable elements: from DNA parasites to architects of metazoan evolution Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions Considering transposable element diversification in de novo annotation approaches.Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons.Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons.Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.PASTEC: an automatic transposable element classification tool A call for benchmarking transposable element annotation methods.Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.Repbase Update, a database of repetitive elements in eukaryotic genomes.LTRclassifier: A website for fast structural LTR retrotransposons classification in plants.The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus.Fine-grained annotation and classification of de novo predicted LTR retrotransposons.Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories.The correlation of genome size and DNA methylation rate in metazoans.Stick insect genomes reveal natural selection's role in parallel speciation.Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors.A machine learning based framework to identify and classify long terminal repeat retrotransposons.Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species.Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics.

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Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

http://www.wikidata.org/entity/Q27490892

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2009 nî lūn-bûn

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2009 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2009年の論文

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Exploring Repetitive DNA Lands ...... Elements in Eukaryotic Genomes

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Genome Biology and Evolution

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Exploring Repetitive DNA Lands ...... Elements in Eukaryotic Genomes

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David Levine

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Marcel L Guibotsy

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Nirmal Ranganathan

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Umeshkumar Keswani

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P2860

Initial sequencing and analysis of the human genome

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

The diploid genome sequence of Candida albicans

Genome sequence of Aedes aegypti, a major arbovirus vector

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

Synergy between sequence and size in Large-scale genomics

Evolution of genes and genomes on the Drosophila phylogeny

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205-20

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1754812

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10.1093/GBE/EVP023

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0

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1

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Cédric Feschotte

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42441584

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20333191

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2817418

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