4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing - Wikidata - wikimedia - TriplyDB

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

http://www.wikidata.org/entity/Q24671878

about

DNA sequence analyses reveal abundant diversity, endemism and evidence for Asian origin of the porcini mushrooms A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data Semiautomated improvement of RNA alignments A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis Use of ITS2 region as the universal DNA barcode for plants and animals A fast structural multiple alignment method for long RNA sequences Multilocus phylogenetic analyses reveal unexpected abundant diversity and significant disjunct distribution pattern of the Hedgehog Mushrooms (Hydnum L.)Formal revision of the Alexandrium tamarense species complex (Dinophyceae) taxonomy: the introduction of five species with emphasis on molecular-based (rDNA) classification.Multi-locus phylogeny of lethal amanitas: implications for species diversity and historical biogeography The changing epitome of species identification - DNA barcoding Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences--a proof of concept Phylogenetic relationships in Myrceugenia (Myrtaceae) based on plastid and nuclear DNA sequences Alloionema similis n. sp., a genetically divergent sibling species of A. appendiculatum Schneider, 1859 (Rhabditida: Alloionematidae) from invasive slugs in California, USA Phylogeny of anopheline (Diptera: Culicidae) species in southern Africa, based on nuclear and mitochondrial genes Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae).Three new species of Physalacria from China, with a key to the Asian taxa.A non-toxigenic but morphologically and phylogenetically distinct new species of Pseudo-nitzschia, P. sabit sp. nov. (Bacillariophyceae).Chodatodesmus australis sp. nov. (Scenedesmaceae, Chlorophyta) from Antarctica, with the emended description of the genus Chodatodesmus, and circumscription of Flechtneria rotunda gen. et sp. nov.Three novel species in the Pseudo-nitzschia pseudodelicatissima complex: P. batesiana sp. nov., P. lundholmiae sp. nov., and P. fukuyoi sp. nov. (Bacillariophyceae) from the Strait of Malacca, Malaysia.UPDATING THE GENUS DICTYOSPHAERIUM AND DESCRIPTION OF MUCIDOSPHAERIUM GEN. NOV. (TREBOUXIOPHYCEAE) BASED ON MORPHOLOGICAL AND MOLECULAR DATA(1).High diversity of Pseudo-nitzschia along the northern coast of Sarawak (Malaysian Borneo), with descriptions of P. bipertita sp. nov. and P. limii sp. nov. (Bacillariophyceae).Coccomyxa: a dominant planktic alga in two acid lakes of different origin.ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).LeARN: a platform for detecting, clustering and annotating non-coding RNAs Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris.ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ).Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics.Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico The systematics of Zoochlorella revisited employing an integrative approach.Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae.Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life Visualization of nucleotide substitutions in the (micro)transcriptome.Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways.Barcoding a quantified food web: crypsis, concepts, ecology and hypotheses.From structure prediction to genomic screens for novel non-coding RNAs.Molecular characterization of 'Bhut Jolokia' the hottest chilli.Molecular taxonomy of Dunaliella (Chlorophyceae), with a special focus on D. salina: ITS2 sequences revisited with an extensive geographical sampling.Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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description

2006 nî lūn-bûn

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2006 թուականին հրատարակուած գիտական յօդուած

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2006 թվականին հրատարակված գիտական հոդված

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2006年の論文

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2006年学术文章

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2006年学术文章

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2006年学术文章

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2006年学术文章

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2006年学术文章

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2006年學術文章

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name

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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type

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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prefLabel

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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BMC Bioinformatics

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4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

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Matthias Wolf

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Philipp N Seibel

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

Sequence logos: a new way to display consensus sequences

Rfam: an RNA family database

T-Coffee: A novel method for fast and accurate multiple sequence alignment

The Jalview Java alignment editor

CINEMA--a novel colour INteractive editor for multiple alignments

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

XML schemas for common bioinformatic data types and their application in workflow systems

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