Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. - Wikidata - wikimedia - TriplyDB

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

http://www.wikidata.org/entity/Q33375848

about

A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data ITS polymorphisms shed light on hybrid evolution in apomictic plants: a case study on the Ranunculus auricomus complex The changing epitome of species identification - DNA barcoding Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences--a proof of concept Phylogenetic reconstruction in the order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding Phylogenetic relationships in Myrceugenia (Myrtaceae) based on plastid and nuclear DNA sequences Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae).Evaluating the Species Boundaries of Green Microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) Using Integrative Taxonomy and DNA Barcoding with Further Implications for the Species Identification in Environmental Samples A non-toxigenic but morphologically and phylogenetically distinct new species of Pseudo-nitzschia, P. sabit sp. nov. (Bacillariophyceae).Chodatodesmus australis sp. nov. (Scenedesmaceae, Chlorophyta) from Antarctica, with the emended description of the genus Chodatodesmus, and circumscription of Flechtneria rotunda gen. et sp. nov.Three novel species in the Pseudo-nitzschia pseudodelicatissima complex: P. batesiana sp. nov., P. lundholmiae sp. nov., and P. fukuyoi sp. nov. (Bacillariophyceae) from the Strait of Malacca, Malaysia.The genus Pseudo-nitzschia (Bacillariophyceae) in a temperate estuary with description of two new species: Pseudo-nitzschia plurisecta sp. nov. and Pseudo-nitzschia abrensis sp. nov.Tetraflagellochloris mauritanica gen. et sp. nov. (Chlorophyceae), a New Flagellated Alga from the Mauritanian Desert: Morphology, Ultrastructure, and Phylogenetic Framing.High diversity of Pseudo-nitzschia along the northern coast of Sarawak (Malaysian Borneo), with descriptions of P. bipertita sp. nov. and P. limii sp. nov. (Bacillariophyceae).Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris.ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ).Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics.Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico The systematics of Zoochlorella revisited employing an integrative approach.R2R--software to speed the depiction of aesthetic consensus RNA secondary structures Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae.Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morpho A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae).Molecular characterization of 'Bhut Jolokia' the hottest chilli.Composition of epiphytic bacterial communities differs on petals and leaves.Molecular taxonomy of Dunaliella (Chlorophyceae), with a special focus on D. salina: ITS2 sequences revisited with an extensive geographical sampling.Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota).Molecular phylogenetics and systematics of the bivalve family Ostreidae based on rRNA sequence-structure models and multilocus species tree.Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2 Environmental influences on the Indo-Pacific octocoral Isis hippuris Linnaeus 1758 (Alcyonacea: Isididae): genetic fixation or phenotypic plasticity?Widespread green algae Chlorella and Stichococcus exhibit polar-temperate and tropical-temperate biogeography.Numerical integration methods and layout improvements in the context of dynamic RNA visualization.A multi-locus approach to barcoding in the Anopheles strodei subgroup (Diptera: Culicidae).DNA Barcoding Green Microalgae Isolated from Neotropical Inland Waters.Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol.Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure.ITS2 secondary structure for species circumscription: case study in southern African Strychnos L. (Loganiaceae).

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P2860

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

http://www.wikidata.org/entity/Q33375848

description

2008 nî lūn-bûn

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2008 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2008 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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BMC Research Notes

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Synchronous visual analysis an ...... ucture alignments using 4SALE.

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Matthias Wolf

http://www.w3.org/2001/XMLSchema#string

Philipp N Seibel

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Tobias Müller

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P2860

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Sequence logos: a new way to display consensus sequences

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization

RNA Movies 2: sequential animation of RNA secondary structures

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

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scholarly article

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10.1186/1756-0500-1-91

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1

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Thomas Dandekar

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2008-10-14T00:00:00Z

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2587473

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