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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

http://www.wikidata.org/entity/Q24794177

about

BRICHOS - a superfamily of multidomain proteins with diverse functions Upcoming challenges for multiple sequence alignment methods in the high-throughput era The accuracy of several multiple sequence alignment programs for proteins M-Coffee: combining multiple sequence alignment methods with T-Coffee Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment Multiple alignment of protein sequences with repeats and rearrangements.Computational approaches to study the effects of small genomic variations.MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts.Inferring angiosperm phylogeny from EST data with widespread gene duplication Genome of crocodilepox virus.Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.A new protein linear motif benchmark for multiple sequence alignment software Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.The construction and use of log-odds substitution scores for multiple sequence alignment.SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing The Enhancer of split complex arose prior to the diversification of schizophoran flies and is strongly conserved between Drosophila and stalk-eyed flies (Diopsidae)PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.Issues in bioinformatics benchmarking: the case study of multiple sequence alignment.Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS Diversity and selective pressures of anticoagulants in three medicinal leeches (Hirudinida: Hirudinidae, Macrobdellidae).Rapid similarity search of proteins using alignments of domain arrangements.A highly divergent gene cluster in honey bees encodes a novel silk family.Evolutionary conservation of the FLOWERING LOCUS C-mediated vernalization response: evidence from the sugar beet (Beta vulgaris).The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.From local structure to a global framework: recognition of protein folds.Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins.Pathogenic potential and growth kinetics of Muko virus in mice and human-derived cells.Quality measures for protein alignment benchmarks MSARC: Multiple sequence alignment by residue clustering.Phylogenetic assessment of alignments reveals neglected tree signal in gaps.Sequence alignment as hypothesis testing.PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.Genome of invertebrate iridescent virus type 3 (mosquito iridescent virus).AliWABA: alignment on the web through an A-Bruijn approach.

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P2860

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

http://www.wikidata.org/entity/Q24794177

description

2005 nî lūn-bûn

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2005 թուականի Մարտին հրատարակուած գիտական յօդուած

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2005 թվականի մարտին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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name

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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BMC Bioinformatics

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DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment

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Amarendran R Subramanian

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Jan Weyer-Menkhoff

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Michael Kaufmann

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Fast and sensitive multiple alignment of large genomic sequences

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

A comprehensive comparison of multiple sequence alignment programs

Benchmarking tools for the alignment of functional noncoding DNA

MUSCLE: multiple sequence alignment with high accuracy and high throughput

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

A general method applicable to the search for similarities in the amino acid sequence of two proteins

Multiple sequence alignment with hierarchical clustering

T-Coffee: A novel method for fast and accurate multiple sequence alignment

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

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scholarly article

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3038783

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10.1186/1471-2105-6-66

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1

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6

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Burkhard Morgenstern

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2005-03-22T00:00:00Z

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7951268

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1041051270

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15784139

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1087830

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