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Using ribosomal protein genes as reference: a tale of caution

Using ribosomal protein genes as reference: a tale of caution

http://www.wikidata.org/entity/Q27301621

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Dissection of a quantitative trait locus for PR interval duration identifies Tnni3k as a novel modulator of cardiac conduction Diverse diseases from a ubiquitous process: the ribosomopathy paradox Inside out: Bone marrow adipose tissue as a source of circulating adiponectin Comprehensive analysis of genes expressed by rare microchimeric fetal cells in the maternal mouse lung Regulator of G-protein signalling 4 expression is not altered in the prefrontal cortex in schizophrenia Identification of reference genes across physiological states for qRT-PCR through microarray meta-analysis Transcript profile of the response of two soybean genotypes to potassium deficiency Female bias in Rhox6 and 9 regulation by the histone demethylase KDM6A mRNA expression analysis of cell cycle genes in islets of pregnant mice Avoiding pitfalls of internal controls: validation of reference genes for analysis by qRT-PCR and Western blot throughout rat retinal development The genome-defence gene Tex19.1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice Differential expression of PRAMEL1, a cancer/testis antigen, during spermatogenesis in the mouse Mammalian CNTD1 is critical for meiotic crossover maturation and deselection of excess precrossover sites Identification and de novo sequencing of housekeeping genes appropriate for gene expression analyses in farmed maraena whitefish (Coregonus maraena) during crowding stress.Identification of stably expressed reference genes for RT-qPCR data normalization in defined localizations of cyclic bovine ovaries.Validation of endogenous reference genes in Buglossoides arvensis for normalizing RT-qPCR-based gene expression data.Selection and evaluation of new reference genes for RT-qPCR analysis in Epinephelus akaara based on transcriptome data Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.Phylogenetic relatedness and host plant growth form influence gene expression of the polyphagous comma butterfly (Polygonia c-album).A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.Normalization with genes encoding ribosomal proteins but not GAPDH provides an accurate quantification of gene expressions in neuronal differentiation of PC12 cells.Detection of novel 3' untranslated region extensions with 3' expression microarrays Revealing new mouse epicardial cell markers through transcriptomics.Evaluation of endogenous references for gene expression profiling in different tissues of the oriental fruit fly Bactrocera dorsalis (Diptera: Tephritidae).Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome.A benchmark of gene expression tissue-specificity metrics.Functional genomics of 5- to 8-cell stage human embryos by blastomere single-cell cDNA analysis Leukocyte count affects expression of reference genes in canine whole blood samples.Estimating developmental states of tumors and normal tissues using a linear time-ordered model.Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development.Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by laser capture microdissection.Expectations, validity, and reality in gene expression profiling.Retinal regeneration in adult zebrafish requires regulation of TGFβ signaling.Reference genes for gene expression studies in wheat flag leaves grown under different farming conditions Age-associated disruption of molecular clock expression in skeletal muscle of the spontaneously hypertensive rat.Drosophila ribosomal protein mutants control tissue growth non-autonomously via effects on the prothoracic gland and ecdysone Placental lactogens induce serotonin biosynthesis in a subset of mouse beta cells during pregnancy Functionally enigmatic genes: a case study of the brain ignorome.Mining and characterization of ubiquitin E3 ligases expressed in the mouse testis.Tempo and mode of gene duplication in mammalian ribosomal protein evolution.

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Using ribosomal protein genes as reference: a tale of caution

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Using ribosomal protein genes as reference: a tale of caution

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Using ribosomal protein genes as reference: a tale of caution

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Using ribosomal protein genes as reference: a tale of caution

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Using ribosomal protein genes as reference: a tale of caution

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Katrijn Van Deun

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Yves Moreau

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P2860

Bioconductor: open software development for computational biology and bioinformatics

A novel ribosomal protein L3-like gene (RPL3L) maps to the autosomal dominant polycystic kidney disease gene region

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expression.

Housekeeping genes as internal standards: use and limits

affy--analysis of Affymetrix GeneChip data at the probe level

Ribosome assembly in eukaryotes

Identification of novel universal housekeeping genes by statistical analysis of microarray data.

Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data.

Housekeeping and tissue-specific genes in mouse tissues.

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Leentje Van Lommel

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Léon-Charles Tranchevent

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