FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data - Wikidata - wikimedia - TriplyDB

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

http://www.wikidata.org/entity/Q27499410

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Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples Repetitive DNA and next-generation sequencing: computational challenges and solutions Identifying fusion transcripts using next generation sequencing TopHat-Fusion: an algorithm for discovery of novel fusion transcripts NTRK1 fusion in glioblastoma multiforme Gene Fusion Markup Language: a prototype for exchanging gene fusion data Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms.SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases Collection, integration and analysis of cancer genomic profiles: from data to insight.Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.CRCDA--Comprehensive resources for cancer NGS data analysis.SimFuse: A Novel Fusion Simulator for RNA Sequencing (RNA-Seq) Data Discovering and understanding oncogenic gene fusions through data intensive computational approaches InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.Novel ZC3H7B-BCOR, MEAF6-PHF1, and EPC1-PHF1 fusions in ossifying fibromyxoid tumors--molecular characterization shows genetic overlap with endometrial stromal sarcoma.Novel YAP1-TFE3 fusion defines a distinct subset of epithelioid hemangioendothelioma.FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.Next-generation prostate cancer biobanking: toward a processing protocol amenable for the International Cancer Genome Consortium.ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma.Next-generation sequencing of translocation renal cell carcinoma reveals novel RNA splicing partners and frequent mutations of chromatin-remodeling genes.Identification of a disease-defining gene fusion in epithelioid hemangioendothelioma.RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data FusionAnalyser: a new graphical, event-driven tool for fusion rearrangements discovery.RNA-Seq and human complex diseases: recent accomplishments and future perspectives.FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data.Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing.ZFP36-FOSB fusion defines a subset of epithelioid hemangioma with atypical features Long-range transcriptome sequencing reveals cancer cell growth regulatory chimeric mRNA.A genetic dichotomy between pure sclerosing epithelioid fibrosarcoma (SEF) and hybrid SEF/low-grade fibromyxoid sarcoma: a pathologic and molecular study of 18 cases New fusion transcripts identified in normal karyotype acute myeloid leukemia.The Molecular Taxonomy of Primary Prostate Cancer.EWSR1-PBX3: a novel gene fusion in myoepithelial tumors.FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

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FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

http://www.wikidata.org/entity/Q27499410

description

2010 nî lūn-bûn

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2010 թուականին հրատարակուած գիտական յօդուած

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2010 թվականին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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FusionSeq: a modular framework ...... Paired-End RNA-Sequencing data

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Ashutosh K Tewari

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Fine-scale structural variation of the human genome

The Ensembl genome database project

RNA-Seq: a revolutionary tool for transcriptomics

The transcriptional landscape of the yeast genome defined by RNA sequencing

Accurate whole human genome sequencing using reversible terminator chemistry

N-myc downstream regulated gene 1 (NDRG1) is fused to ERG in prostate cancer

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10

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