Prediction and assignment of function for a divergent N-succinyl amino acid racemase
about
The Enzyme Function Initiative.Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screeningLeveraging structure for enzyme function prediction: methods, opportunities, and challengesRescoring Docking Hit Lists for Model Cavity Sites: Predictions and Experimental TestingEvolution of Enzymatic Activities in the Enolase Superfamily: l -Rhamnonate Dehydratase † ‡Evolution of Enzymatic Activities in the Enolase Superfamily: Stereochemically Distinct Mechanisms in Two Families of cis , cis -Muconate Lactonizing Enzymes † ‡Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis ,Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamilyDiscovery of new enzymes and metabolic pathways by using structure and genome contextLoss of quaternary structure is associated with rapid sequence divergence in the OSBS familyEnzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networksEvolutionarily conserved substrate substructures for automated annotation of enzyme superfamiliesStrategies for discovery and improvement of enzyme function: state of the art and opportunitiesOutcome of a workshop on applications of protein models in biomedical researchUsing sequence similarity networks for visualization of relationships across diverse protein superfamilies.Virtual ligand screening against comparative protein structure models.Unmet challenges of structural genomicsCatalytic site identification--a web server to identify catalytic site structural matches throughout PDB.Considerations for designing chemical screening strategies in plant biology.Dynamic changes in the secondary structure of ECE-1 and XCE account for their different substrate specificities.Novel inhibitors of anthrax edema factor.Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking.Molecular docking screens using comparative models of proteinsStudying enzyme-substrate specificity in silico: a case study of the Escherichia coli glycolysis pathwayMolecular modeling and ligand docking for solute carrier (SLC) transportersFragment screening of infectious disease targets in a structural genomics environmentExploiting structural classifications for function prediction: towards a domain grammar for protein function.Divergent evolution in enolase superfamily: strategies for assigning functionsPharmacophore-based virtual screening to aid in the identification of unknown protein function.The evolution of enzyme function in the isomerases.New insights about enzyme evolution from large scale studies of sequence and structure relationships.Rapid catalytic template searching as an enzyme function prediction procedure.Biochemical functional predictions for protein structures of unknown or uncertain functionPredicting the functions and specificity of triterpenoid synthases: a mechanism-based multi-intermediate docking approach.Constructing de novo biosynthetic pathways for chemical synthesis inside living cells.Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamiliesDivergent evolution of ligand binding in the o-succinylbenzoate synthase family.Predicting enzyme-substrate specificity with QM/MM methods: a case study of the stereospecificity of (D)-glucarate dehydratase.Evaluating Functional Annotations of Enzymes Using the Gene Ontology.Analysis of protein function and its prediction from amino acid sequence.
P2860
Q24628703-8D1C1118-BF69-4350-B2E9-AC7CA193A690Q24646625-A6A820D5-26A4-4BDA-A184-D2E71ED3BE1DQ26820871-59DC45D0-F76F-4607-97FA-CAF4102D4842Q27649874-81C08617-AD00-4D91-B842-B8233C0A9EFBQ27651842-E009745C-4E01-44B3-9744-BBF107F15C8DQ27653827-5AB53E1E-AD5C-4EFD-9670-8A3B2C531E82Q27658038-D66FB914-7FBA-4533-AB39-6A46DD5EE061Q27677856-952F5E8D-8A17-4CD6-9414-9EEE34DFA949Q27680014-8441AA86-9B79-47C8-B929-72D0D6F7C0DCQ27683981-07F33D1B-732D-4D5C-8C6B-0FE2360829F6Q28084922-0D3F7B0D-1001-4EF2-8F18-903D0F81CFD7Q28473170-C9C10C61-FB0E-4D58-975B-F95C853FA2E9Q28661877-985CCD93-C921-432B-9093-E73E3970670BQ28751701-9C8BF880-D09D-4C7D-A1FF-9C6F4E3A197EQ30374720-D3820BB4-04B3-4722-A925-CA6593B47BA9Q30410854-75912921-5721-4007-B762-089ABFBB9186Q30430442-C26DECFD-ADA9-4C6F-9588-EC9793560268Q30430641-AAE79499-14B0-4647-99E1-4C2F9F09CC1AQ30636976-79DEB586-014D-475C-9F6B-F0005A8F9401Q31106005-79759CCC-43B6-477D-B61E-8D040DA6A609Q33351165-DB1A77F1-4D18-484F-BDF6-74670836F554Q33459531-0C70E4D5-CB58-4514-A8AA-5546A7137CDDQ33511631-0605968A-33F8-407F-B7C1-B5AF5655C149Q33563071-5D53454B-8699-416F-AEC3-4C4A2A53B7E9Q33751096-445555C6-227D-47F1-82F8-9DF29AE3D326Q33836468-1ECFD500-227F-4D63-AAD6-04DD93702BFCQ34061411-BAB7DE78-12AC-4DEA-88BA-B77EC1C2C7A6Q34070425-252C6E10-9AE9-4275-B11D-9ACC20A6F223Q34262313-DF10A5B9-3EA5-4BF5-B43C-D1E827C7C8EDQ34428173-79E564CE-5091-45F5-A6ED-BDF8643EE81DQ34430858-3967BBC5-111E-47D8-A232-AF20BF27396FQ34722623-2C20548B-C585-4D04-877F-1BE5129011EEQ35214509-20E7B48C-23DE-4562-9BF0-C156858DCBA8Q35316916-BB2DE9E7-C10B-4C1B-AEC7-9CA5A1610DB4Q37158874-161A390A-5CDB-4133-AB73-5A4FAC5E2EFCQ37221444-F77A9B5C-032F-4B53-8D80-58DD867D72DAQ37538038-31342DCF-BFD9-49A6-AB37-4AC01FF834E0Q37661599-3EF54604-81AA-4F2E-8B2A-EC31AACD3EFFQ38440676-F5F06E2C-E06B-4D6E-80F5-4BC6AC387719Q38501868-9071F3EE-7E84-471D-AD1F-85A98BBCC319
P2860
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
description
2007 nî lūn-bûn
@nan
2007 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2007 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@ast
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@en
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@nl
type
label
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@ast
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@en
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@nl
prefLabel
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@ast
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@en
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@nl
P2093
P50
P356
P1476
Prediction and assignment of function for a divergent N-succinyl amino acid racemase
@en
P2093
Alexander A Fedorov
Chakrapani Kalyanaraman
Elena V Fedorov
John A Gerlt
Shoshana Brown
P2888
P304
P356
10.1038/NCHEMBIO.2007.11
P577
2007-08-01T00:00:00Z
P5875
P6179
1012134964