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Reuse of public genome-wide gene expression data

Reuse of public genome-wide gene expression data

http://www.wikidata.org/entity/Q29219375

about

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report A crowdsourcing approach for reusing and meta-analyzing gene expression data Exploring the potential of public proteomics data Learning from Co-expression Networks: Possibilities and Challenges User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability G Protein-Coupled Receptor (GPCR) Expression in Native Cells: "Novel" endoGPCRs as Physiologic Regulators and Therapeutic Targets Multiple Transcriptome Data Analysis Reveals Biologically Relevant Atopic Dermatitis Signature Genes and Pathways A Golden Age for Working with Public Proteomics Data Cancer Biology, Toxicology and Alternative Methods Development Go Hand-in-Hand Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources Data reuse and the open data citation advantage COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)Wide-Open: Accelerating public data release by automating detection of overdue datasets COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization.K-Profiles: A Nonlinear Clustering Method for Pattern Detection in High Dimensional Data.Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.Nonlinear Network Reconstruction from Gene Expression Data Using Marginal Dependencies Measured by DCOL.Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data.Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis.Against Dataism and for Data Sharing of Big Biomedical and Clinical Data with Research Parasites.Transcriptomic characterization of differential gene expression in oral squamous cell carcinoma: a meta-analysis of publicly available microarray data sets.Emerging Putative Associations between Non-Coding RNAs and Protein-Coding Genes in Neuropathic Pain: Added Value from Reusing Microarray Data Bayesian Computation Methods for Inferring Regulatory Network Models Using Biomedical Data.The CO-Regulation Database (CORD): a tool to identify coordinately expressed genes Use it or lose it: citations predict the continued online availability of published bioinformatics resources.Meta-analysis of crowdsourced data compendia suggests pan-disease transcriptional signatures of autoimmunity.CorrelaGenes: a new tool for the interpretation of the human transcriptome Identifying disease-associated pathways in one-phenotype data based on reversal gene expression orderings.Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration.massiR: a method for predicting the sex of samples in gene expression microarray datasets.Mating system variation drives rapid evolution of the female transcriptome in Drosophila pseudoobscura.Guidelines for genetic studies in single patients: lessons from primary immunodeficiencies.ArrayExpress update--simplifying data submissions.CellNet: network biology applied to stem cell engineering Global meta-analysis of transcriptomics studies.Toward computational cumulative biology by combining models of biological datasets.Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach Systems medicine: evolution of systems biology from bench to bedside

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Reuse of public genome-wide gene expression data

http://www.wikidata.org/entity/Q29219375

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2012 nî lūn-bûn

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2012 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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Reuse of public genome-wide gene expression data

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Reuse of public genome-wide gene expression data

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Reuse of public genome-wide gene expression data

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Reuse of public genome-wide gene expression data

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Reuse of public genome-wide gene expression data

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Reuse of public genome-wide gene expression data

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Johan Rung

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Towards establishment of a rice stress response interactome

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources.

Cistrome: an integrative platform for transcriptional regulation studies

Bioconductor: open software development for computational biology and bioinformatics

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

Gene ontology: tool for the unification of biology

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

A gene atlas of the mouse and human protein-encoding transcriptomes

The NCBI dbGaP database of genotypes and phenotypes

RNA-Seq: a revolutionary tool for transcriptomics

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