CAVER: a new tool to explore routes from protein clefts, pockets and cavities - Wikidata - wikimedia - TriplyDB

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

http://www.wikidata.org/entity/Q29619781

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Structures of human cytochrome P-450 2E1. Insights into the binding of inhibitors and both small molecular weight and fatty acid substrates Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex Membrane position of ibuprofen agrees with suggested access path entrance to cytochrome P450 2C9 active site Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence factor Structural and functional analysis of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF Docking and homology modeling explain inhibition of the human vesicular glutamate transporters Structure of the non-redox-active tungsten/[4Fe:4S] enzyme acetylene hydratase Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamics MAP_CHANNELS: a computation tool to aid in the visualization and characterization of solvent channels in macromolecular crystals.The Role of Protein-Protein and Protein-Membrane Interactions on P450 Function The Crystal Structure of Cytochrome P460 of Nitrosomonas europaea Reveals a Novel Cytochrome Fold and Heme−Protein Cross-link † , ‡Crystal structure of poxvirus thymidylate kinase: An unexpected dimerization has implications for antiviral therapy Structural consequences of effector protein complex formation in a diiron hydroxylase The FAD Cofactor of RebC Shifts to an IN Conformation upon Flavin Reduction † , ‡Structure of a xenon derivative ofEscherichia colicopper amine oxidase: confirmation of the proposed oxygen-entry pathway Dihydroorotase from the Hyperthermophile Aquifiex aeolicus Is Activated by Stoichiometric Association with Aspartate Transcarbamoylase and Forms a One-Pot Reactor for Pyrimidine Biosynthesis † ‡Insights into tRNA-Dependent Amidotransferase Evolution and Catalysis from the Structure of the Aquifex aeolicus Enzyme Crystal Structures of Mycobacterium tuberculosis KasA Show Mode of Action within Cell Wall Biosynthesis and its Inhibition by Thiolactomycin An Asymmetric Model for Na + -translocating Glutaconyl-CoA Decarboxylases Plasmodium falciparumacyl carrier protein crystal structures in disulfide-linked and reduced states and their prevalence during blood stage growth Mg2+-dependent gating of bacterial MgtE channel underlies Mg2+ homeostasis Structural insights into the substrate tunnel of Saccharomyces cerevisiae carbonic anhydrase Nce103 Structural Determinants of Substrate Recognition in the HAD Superfamily Member d - glycero - d - manno -Heptose-1,7-bisphosphate Phosphatase (GmhB),Evidence for a Bicarbonate “Escort” Site in Haemophilus influenzae β-Carbonic Anhydrase,Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis Human Cytochrome P450 2E1 Structures with Fatty Acid Analogs Reveal a Previously Unobserved Binding Mode Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers,The Exquisite Structure and Reaction Mechanism of Bacterial Pz-peptidase A toward Collagenous Peptides: X-RAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS OF PZ-PEPTIDASE A REVEALS DIFFERENCES FROM MAMMALIAN THIMET OLIGOPEPTIDASE Structural Basis for the Oxidation of Protein-bound Sulfur by the Sulfur Cycle Molybdohemo-Enzyme Sulfane Dehydrogenase SoxCD Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in non-ribosomal peptide synthesis Ligand Binding Induces an Ammonia Channel in 2-Amino-2-desoxyisochorismate (ADIC) Synthase PhzE Bilirubin oxidase from Myrothecium verrucaria: X-ray determination of the complete crystal structure and a rational surface modification for enhanced electrocatalytic O2 reduction Cloning, functional expression, biochemical characterization, and structural analysis of a haloalkane dehalogenase from Plesiocystis pacifica SIR-1 The crystal structure of an esterase from the hyperthermophilic microorganism Pyrobaculum calidifontis VA1 explains its enantioselectivity Crystal structure of a copper-transporting PIB-type ATPase Crystal Structure of H2O2-dependent Cytochrome P450SP with Its Bound Fatty Acid Substrate: INSIGHT INTO THE REGIOSELECTIVE HYDROXYLATION OF FATTY ACIDS AT THE POSITION Conformational Adaptation of Human Cytochrome P450 2B6 and Rabbit Cytochrome P450 2B4 Revealed upon Binding Multiple Amlodipine Molecules Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases Discrimination between CO and O 2 in Heme Oxygenase: Comparison of Static Structures and Dynamic Conformation Changes following CO Photolysis A novel mechanism of ligand binding and release in the odorant binding protein 20 from the malaria mosquitoAnopheles gambiae

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P2860

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

http://www.wikidata.org/entity/Q29619781

description

2006 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի հունիսին հրատարակված գիտական հոդված

@hy

artículu científicu espublizáu en 2006

@ast

im Juni 2006 veröffentlichter wissenschaftlicher Artikel

@de

scientific article (publication date: 22 June 2006)

@en

wetenschappelijk artikel (gepubliceerd op 2006/06/22)

@nl

наукова стаття, опублікована в червні 2006

@uk

مقالة علمية (نشرت في 22-6-2006)

@ar

name

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

@ast

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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type

label

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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prefLabel

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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1471-2105-7-316

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BMC Bioinformatics

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CAVER: a new tool to explore routes from protein clefts, pockets and cavities

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Banás P

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Damborský J

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Koca J

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Kosinová P

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Otyepka M

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Petrek M

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P2860

Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15 A resolution

Crystallographic and kinetic evidence of a collision complex formed during halide import in haloalkane dehalogenase

Haloalkane dehalogenases: structure of a Rhodococcus enzyme

Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26

Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition

Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates

Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues

Crystal structure of haloalkane dehalogenase: an enzyme to detoxify halogenated alkanes

Refined X-ray structures of haloalkane dehalogenase at pH 6.2 and pH 8.2 and implications for the reaction mechanism

Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site

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