SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.
about
N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactionsRNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAsHigh-throughput characterization of protein-RNA interactionsProgress and challenges for chemical probing of RNA structure inside living cellsBioinformatics of prokaryotic RNAsFoldAtlas: a repository for genome-wide RNA structure probing dataTranscriptome-wide interrogation of RNA secondary structure in living cells with icSHAPEIdentification and function annotation of long intervening noncoding RNAs.Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation.Computational analysis of RNA structures with chemical probing data.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataRNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.Data-directed RNA secondary structure prediction using probabilistic modeling.The centrality of RNA for engineering gene expressionDMS-MaPseq for genome-wide or targeted RNA structure probing in vivo.How to find RNA thermometers.Landscape and variation of RNA secondary structure across the human transcriptomeFinding the target sites of RNA-binding proteins.Tackling structures of long noncoding RNAs.RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing dataProbing-directed identification of novel structured RNAs.Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis.An inducible long noncoding RNA amplifies DNA damage signaling.Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.Insights into RNA structure and function from genome-wide studies.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule TherapeuticsTechnologies to probe functions and mechanisms of long noncoding RNAs.Toward a next-generation atlas of RNA secondary structure.Study strategies for long non-coding RNAs and their roles in regulating gene expression.Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions.Bridging the gap between in vitro and in vivo RNA folding.Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structureStructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing.
P2860
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P2860
SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.
description
2012 nî lūn-bûn
@nan
2012 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年学术文章
@wuu
2012年学术文章
@zh-cn
2012年学术文章
@zh-hans
2012年学术文章
@zh-my
2012年学术文章
@zh-sg
2012年學術文章
@yue
name
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@ast
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@en
type
label
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@ast
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@en
prefLabel
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@ast
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@en
P2093
P2860
P356
P1433
P1476
SeqFold: genome-scale reconstr ...... gh-throughput sequencing data.
@en
P2093
Howard Y Chang
Michael P Snyder
Zhengqing Ouyang
P2860
P304
P356
10.1101/GR.138545.112
P577
2012-10-11T00:00:00Z