Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
about
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogenyIntegrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networksScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces speciesA phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site predictionA survey of DNA motif finding algorithmsA model of the statistical power of comparative genome sequence analysisComprehensive analysis of the base composition around the transcription start site in MetazoaFrom sequence to structure and back again: approaches for predicting protein-DNA bindingPhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequencesProtein family comparison using statistical models and predicted structural informationConservation and evolution of cis-regulatory systems in ascomycete fungiLimitations and potentials of current motif discovery algorithms.Gene annotation and network inference by phylogenetic profiling.Quantifying similarity between motifsTranscriptional regulatory code of a eukaryotic genome.Linking DNA-binding proteins to their recognition sequences by using protein microarraysThe gut microbiota as an environmental factor that regulates fat storageMotif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteinsApicidin F: characterization and genetic manipulation of a new secondary metabolite gene cluster in the rice pathogen Fusarium fujikuroiThe Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transferCpxR Activates MexAB-OprM Efflux Pump Expression and Enhances Antibiotic Resistance in Both Laboratory and Clinical nalB-Type Isolates of Pseudomonas aeruginosaA nutrient-sensitive interaction between Sirt1 and HNF-1α regulates Crp expressionMISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequencesSystematic identification of cis-regulatory sequences active in mouse and human embryonic stem cellsIdentification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomicsReliable prediction of transcription factor binding sites by phylogenetic verificationAn improved map of conserved regulatory sites for Saccharomyces cerevisiae.Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.fREDUCE: detection of degenerate regulatory elements using correlation with expression.A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) dataMore robust detection of motifs in coexpressed genes by using phylogenetic information.Practical strategies for discovering regulatory DNA sequence motifs.Phylogeny based discovery of regulatory elements.EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequencesDetecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.Coding limits on the number of transcription factorsCis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curvesCombining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifsWeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
P2860
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P2860
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
description
2003 nî lūn-bûn
@nan
2003 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
name
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@ast
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@en
type
label
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@ast
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@en
prefLabel
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@ast
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@en
P356
P1433
P1476
Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
@en
P2093
Gary D Stormo
P304
P356
10.1093/BIOINFORMATICS/BTG329
P407
P577
2003-12-01T00:00:00Z