rVISTA 2.0: evolutionary analysis of transcription factor binding sites. - Wikidata - wikimedia - TriplyDB

rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

http://www.wikidata.org/entity/Q31081582

about

Phylo: a citizen science approach for improving multiple sequence alignment.MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE BAL1 and BBAP are regulated by a gamma interferon-responsive bidirectional promoter and are overexpressed in diffuse large B-cell lymphomas with a prominent inflammatory infiltrate NFATc2 and T-bet contribute to T-helper-cell-subset-specific regulation of IL-21 expression MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model Conserved proximal promoter elements control repulsive guidance molecule c/hemojuvelin (Hfe2) gene transcription in skeletal muscle MicroRNA 203 expression in keratinocytes is dependent on regulation of p53 levels by E6 Heme oxygenase-1 couples activation of mitochondrial biogenesis to anti-inflammatory cytokine expression Evolutionary history and genome organization of DUF1220 protein domains Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA A global role for EKLF in definitive and primitive erythropoiesis Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results The MAPPER database: a multi-genome catalog of putative transcription factor binding sites Dcode.org anthology of comparative genomic tools CONREAL web server: identification and visualization of conserved transcription factor binding sites.Using multiple alignments to improve seeded local alignment algorithms.Identifying synonymous regulatory elements in vertebrate genomes Functional Diversification of Motor Neuron-specific Isl1 Enhancers during Evolution Comparative genomics identifies the mouse Bmp3 promoter and an upstream evolutionary conserved region (ECR) in mammals The Regulation of Cytokine Networks in Hippocampal CA1 Differentiates Extinction from Those Required for the Maintenance of Contextual Fear Memory after Recall Development of heart valves requires Gata4 expression in endothelial-derived cells c-myc Repression of TSC2 contributes to control of translation initiation and Myc-induced transformation Developmental expression and cardiac transcriptional regulation of Myh7b, a third myosin heavy chain in the vertebrate heart Identification of novel Fgf enhancers and their role in dental evolution ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites ReXSpecies--a tool for the analysis of the evolution of gene regulation across species Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals Isl1 and Pou4f2 form a complex to regulate target genes in developing retinal ganglion cells Bioinformatic analyses to select phenotype affecting polymorphisms in HTR2C gene.Comparative genomics-based identification and analysis of cis-regulatory elements miR-10a contributes to retinoid acid-induced smooth muscle cell differentiation ISL1 directly regulates FGF10 transcription during human cardiac outflow formation.SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools.NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae BLISS: binding site level identification of shared signal-modules in DNA regulatory sequences.Beyond microarrays: find key transcription factors controlling signal transduction pathways Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

http://www.wikidata.org/entity/Q31081582

description

2004 nî lūn-bûn

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2004 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2004 թվականի հուլիսին հրատարակված գիտական հոդված

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2004年の論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年论文

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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Nucleic Acids Research

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

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Gabriela G Loots

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Ivan Ovcharenko

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P2860

The Sequence of the Human Genome

Initial sequencing and comparative analysis of the mouse genome

TRANSFAC: a database on transcription factors and their DNA binding sites

Human-mouse alignments with BLASTZ

MATCH: A tool for searching transcription factor binding sites in DNA sequences

TRANSFAC: transcriptional regulation, from patterns to profiles

Fast algorithms for large-scale genome alignment and comparison.

rVista for comparative sequence-based discovery of functional transcription factor binding sites

zPicture: dynamic alignment and visualization tool for analyzing conservation profiles.

Cardiac-specific activity of an Nkx2-5 enhancer requires an evolutionarily conserved Smad binding site.

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W217-21

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scholarly article

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10.1093/NAR/GKH383

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Web Server issue

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32

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2004-07-01T00:00:00Z

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8493638

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15215384

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441521

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