PhosphoScore: an open-source phosphorylation site assignment tool for MSn data. - Wikidata - wikimedia - TriplyDB

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

http://www.wikidata.org/entity/Q31158709

about

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule Computational phosphoproteomics: from identification to localization Quantitative proteomic analysis of histone modifications Protein structure as a means to triage proposed PTM sites.Isobar(PTM): a software tool for the quantitative analysis of post-translationally modified proteins An Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data.Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies.The coming of age of phosphoproteomics--from large data sets to inference of protein functions Exploiting Thread-Level and Instruction-Level Parallelism to Cluster Mass Spectrometry Data using Multicore Architectures.Large-scale label-free phosphoproteomics: from technology to data interpretation.Strategies for quantitation of phosphoproteomic data.Phosphoproteomics for the masses Proteomic profiling of nuclei from native renal inner medullary collecting duct cells using LC-MS/MS Integrated data management and validation platform for phosphorylated tandem mass spectrometry data.Phosphoproteomic profiling reveals vasopressin-regulated phosphorylation sites in collecting duct Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells.A novel two-stage tandem mass spectrometry approach and scoring scheme for the identification of O-GlcNAc modified peptides.Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score.Phosphoproteomics by mass spectrometry: insights, implications, applications and limitations.Toward a complete in silico, multi-layered embryonic stem cell regulatory network.What can we learn about cardioprotection from the cardiac mitochondrial proteome?A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.Examining factors that influence erroneous phosphorylation site localization via competing fragmentation and rearrangement reactions during ion trap CID-MS/MS and -MS(3.).LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach.iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.Modification site localization scoring integrated into a search engine.PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.Technical phosphoproteomic and bioinformatic tools useful in cancer research.Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination.Phosphoproteomics of vasopressin signaling in the kidney.Modification site localization scoring: strategies and performance Solid-phase capture for the detection and relative quantification of S-nitrosoproteins by mass spectrometry.The current state of the art of quantitative phosphoproteomics and its applications to diabetes research Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification Quantitative analysis of phosphorylation-based protein signaling networks in the immune system by mass spectrometry.Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic.Confident phosphorylation site localization using the Mascot Delta Score.Automated Glycan Sequencing from Tandem Mass Spectra of N-Linked Glycopeptides

P2860

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P2860

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

http://www.wikidata.org/entity/Q31158709

description

2008 nî lūn-bûn

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2008 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2008 թվականի հունիսին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

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PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

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type

label

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

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PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

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prefLabel

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

@ast

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

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P1433

Journal of Proteome Research

P1476

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

@en

P2093

Brian E Ruttenberg

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Jason D Hoffert

http://www.w3.org/2001/XMLSchema#string

Mark A Knepper

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P2860

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

Large-scale characterization of HeLa cell nuclear phosphoproteins

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.

Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.

Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway

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3054-3059

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scholarly article

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10.1021/PR800169K

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P433

7

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P478

7

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Trairak Pisitkun

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2008-06-11T00:00:00Z

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5313254

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18543960

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open-source software

phosphorylation

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2562657

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