A feature-based approach to modeling protein-DNA interactions
about
Long noncoding RNA as modular scaffold of histone modification complexesCrowdsourcing biomedical research: leveraging communities as innovation enginesProtein-DNA binding in high-resolutionThe multiple-specificity landscape of modular peptide recognition domainsInferring binding energies from selected binding sitesVarying levels of complexity in transcription factor binding motifs.Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells.MuMoD: a Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP dataBuilding accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCEThe jigsaw puzzle of sequence phenotype inference: Piecing together Shannon entropy, importance sampling, and Empirical Bayes.Identifying regulatory elements in eukaryotic genomes.Variable structure motifs for transcription factor binding sites.Dinucleotide weight matrices for predicting transcription factor binding sites: generalizing the position weight matrixChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip dataMetamotifs--a generative model for building families of nucleotide position weight matrices.Statistical Analyses of Next Generation Sequence Data: A Partial Overview.Tree-based position weight matrix approach to model transcription factor binding site profiles.Absence of a simple code: how transcription factors read the genomeAccurate prediction of inducible transcription factor binding intensities in vivo.Maximally efficient modeling of DNA sequence motifs at all levels of complexity.Experimental strategies for studying transcription factor-DNA binding specificities.A general pairwise interaction model provides an accurate description of in vivo transcription factor binding sitesQuantitative modeling of transcription factor binding specificities using DNA shape.Systematic dissection of the sequence determinants of gene 3' end mediated expression control.Sequence information gain based motif analysisAn affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system.Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.Improved models for transcription factor binding site identification using nonindependent interactionsEvaluating tools for transcription factor binding site prediction.Sequence and chromatin determinants of cell-type-specific transcription factor bindingExploring comprehensive within-motif dependence of transcription factor binding in Escherichia coli.The evolutionary turnover of recombination hot spots contributes to speciation in miceEvaluation of methods for modeling transcription factor sequence specificity.Covariation between homeodomain transcription factors and the shape of their DNA binding sitesQuantitative modeling of gene expression using DNA shape features of binding sites.TFBSshape: a motif database for DNA shape features of transcription factor binding sitesAutomated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.ALS Along the Axons - Expression of Coding and Noncoding RNA Differs in Axons of ALS models.Fast motif matching revisited: high-order PWMs, SNPs and indels.
P2860
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P2860
A feature-based approach to modeling protein-DNA interactions
description
2008 nî lūn-bûn
@nan
2008 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
A feature-based approach to modeling protein-DNA interactions
@ast
A feature-based approach to modeling protein-DNA interactions
@en
type
label
A feature-based approach to modeling protein-DNA interactions
@ast
A feature-based approach to modeling protein-DNA interactions
@en
prefLabel
A feature-based approach to modeling protein-DNA interactions
@ast
A feature-based approach to modeling protein-DNA interactions
@en
P2860
P1476
A feature-based approach to modeling protein-DNA interactions
@en
P2093
Shai Lubliner
P2860
P304
P356
10.1371/JOURNAL.PCBI.1000154
P577
2008-08-22T00:00:00Z