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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

http://www.wikidata.org/entity/Q33575507

about

Practical guidelines for the comprehensive analysis of ChIP-seq data TRIM37 is a new histone H2A ubiquitin ligase and breast cancer oncoprotein A tripartite transcription factor network regulates primordial germ cell specification in mice Phosphorylation of p53 by TAF1 inactivates p53-dependent transcription in the DNA damage response Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation Reprogramming of lysosomal gene expression by interleukin-4 and Stat6 Nrf2 suppresses macrophage inflammatory response by blocking proinflammatory cytokine transcription Co-regulation of histone-modifying enzymes in cancer Global analysis of DNA methylation by Methyl-Capture sequencing reveals epigenetic control of cisplatin resistance in ovarian cancer cell Pleiohomeotic interacts with the core transcription elongation factor Spt5 to regulate gene expression in Drosophila Lysine acetyltransferase GCN5b interacts with AP2 factors and is required for Toxoplasma gondii proliferation A novel KLF6-Rho GTPase axis regulates hepatocellular carcinoma cell migration and dissemination Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma Endogenous DUX4 expression in FSHD myotubes is sufficient to cause cell death and disrupts RNA splicing and cell migration pathways Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein.The Drosophila speciation factor HMR localizes to genomic insulator sites.Features that define the best ChIP-seq peak calling algorithms Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.EZH2-mediated H3K27 trimethylation mediates neurodegeneration in ataxia-telangiectasia.Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling.diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates.Assessing computational methods for transcription factor target gene identification based on ChIP-seq data.HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems.From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data A transcription factor hierarchy defines an environmental stress response network ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus.Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions.NF-E2 p45 is important for establishing normal function of platelets.A novel method for identification and quantification of consistently differentially methylated regions Prenatal Exposure to a Maternal High-Fat Diet Affects Histone Modification of Cardiometabolic Genes in Newborn Rats.Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes.The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

http://www.wikidata.org/entity/Q33575507

description

2010 nî lūn-bûn

@nan

2010 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի մայիսին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

@ast

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

@en

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

@nl

type

label

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

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prefLabel

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

@ast

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

@en

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

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BMC Bioinformatics

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

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P2093

Claude Gazin

http://www.w3.org/2001/XMLSchema#string

David S Lapointe

http://www.w3.org/2001/XMLSchema#string

Hervé Pagès

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Lihua J Zhu

http://www.w3.org/2001/XMLSchema#string

Michael R Green

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Nathan D Lawson

http://www.w3.org/2001/XMLSchema#string

Simon M Lin

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P2860

Model-based analysis of ChIP-Seq (MACS)

Bioconductor: open software development for computational biology and bioinformatics

Gene ontology: tool for the unification of biology

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

EnsMart: a generic system for fast and flexible access to biological data

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