PocketMatch: a new algorithm to compare binding sites in protein structures.
about
targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysisStructure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive reviewGeomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approachBinding of protein kinase inhibitors to synapsin I inferred from pair-wise binding site similarity measurementsStructural annotation of Mycobacterium tuberculosis proteomeCrowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosiseMatchSite: sequence order-independent structure alignments of ligand binding pockets in protein modelsSimilarities between the Binding Sites of SB-206553 at Serotonin Type 2 and Alpha7 Acetylcholine Nicotinic Receptors: Rationale for Its Polypharmacological ProfileBioGPS: The Music for the Chemo- and Bioinformatics Walzer.Resolving protein structure-function-binding site relationships from a binding site similarity network perspective.PocketAnnotate: towards site-based function annotation.BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server.An automated framework for understanding structural variations in the binding grooves of MHC class II moleculesRapid comparison of protein binding site surfaces with property encoded shape distributionsLigand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sitesVirtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapyCross-reactivity virtual profiling of the human kinome by X-react(KIN): a chemical systems biology approachPredictive in silico off-target profiling in drug discovery.SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvaturePocket-based drug design: exploring pocket spaceLibME-automatic extraction of 3D ligand-binding motifs for mechanistic analysis of protein-ligand recognition.PLIC: protein-ligand interaction clusters.Characterizing the pocketome of Mycobacterium tuberculosis and application in rationalizing polypharmacological target selection.Old friends in new guise: repositioning of known drugs with structural bioinformatics.Computational systems approach for drug target discovery.Exploiting structural information for drug-target assessment.Deciphering common recognition principles of nucleoside mono/di and tri-phosphates binding in diverse proteins via structural matching of their binding sites.Comparing Drug Images and Repurposing Drugs with BioGPS and FLAPdock: The Thymidylate Synthase Case.Structural analysis of dihydrofolate reductases enables rationalization of antifolate binding affinities and suggests repurposing possibilities.Local Alignment of Ligand Binding Sites in Proteins for Polypharmacology and Drug Repositioning.Surface-based protein binding pocket similarity.A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis.Considerations of Protein Subpockets in Fragment-Based Drug Design.Protein function annotation by local binding site surface similarity.Statistical Profiling of One Promiscuous Protein Binding Site: Illustrated by Urokinase Catalytic Domain.Deciphering complex patterns of class-I HLA-peptide cross-reactivity via hierarchical grouping.Volarea - a bioinformatics tool to calculate the surface area and the volume of molecular systems.Comparative assessment of strategies to identify similar ligand-binding pockets in proteins.Acceleration of Binding Site Comparisons by Graph Partitioning.
P2860
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P2860
PocketMatch: a new algorithm to compare binding sites in protein structures.
description
2008 nî lūn-bûn
@nan
2008 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
PocketMatch: a new algorithm to compare binding sites in protein structures.
@ast
PocketMatch: a new algorithm to compare binding sites in protein structures.
@en
type
label
PocketMatch: a new algorithm to compare binding sites in protein structures.
@ast
PocketMatch: a new algorithm to compare binding sites in protein structures.
@en
prefLabel
PocketMatch: a new algorithm to compare binding sites in protein structures.
@ast
PocketMatch: a new algorithm to compare binding sites in protein structures.
@en
P2860
P356
P1433
P1476
PocketMatch: a new algorithm to compare binding sites in protein structures.
@en
P2093
Kalidas Yeturu
P2860
P2888
P356
10.1186/1471-2105-9-543
P577
2008-12-17T00:00:00Z
P5875
P6179
1019709381