Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
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Gene discovery in the horned beetle Onthophagus taurusDe novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas)Optimization of de novo transcriptome assembly from next-generation sequencing dataTranscriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella spDe novo assembly of mud loach (Misgurnus anguillicaudatus) skin transcriptome to identify putative genes involved in immunity and epidermal mucus secretionTranscriptome Sequencing, De Novo Assembly and Differential Gene Expression Analysis of the Early Development of Acipenser baeriTranscriptomic characterization of the immunogenetic repertoires of heteromyid rodentsSingle nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencingExploring the switchgrass transcriptome using second-generation sequencing technologyApplications of next generation sequencing in molecular ecology of non-model organismsIdentification of Immune-Related Genes and Development of SSR/SNP Markers from the Spleen Transcriptome of Schizothorax prenanti.Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys spectabilis).Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesisPopulation-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon.Analysis of the floral transcriptome of Tarenaya hassleriana (Cleomaceae), a member of the sister group to the Brassicaceae: towards understanding the base of morphological diversity in Brassicales.The characterization of twenty sequenced human genomes.Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eelMining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes.De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq.A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differencesGeneration of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP arrayDe novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinumGenome-scale transcriptome analysis of the desert poplar, Populus euphratica.Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.Assembly, gene annotation and marker development using 454 floral transcriptome sequences in Ziziphus celata (Rhamnaceae), a highly endangered, Florida endemic plant.Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hakeTranscriptomics of a giant freshwater prawn (Macrobrachium rosenbergii): de novo assembly, annotation and marker discovery.Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors.Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptome.Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies.Development of genomic resources for Pacific Herring through targeted transcriptome pyrosequencingTranscriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish.The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum)Transcriptome analysis and SSR/SNP markers information of the blunt snout bream (Megalobrama amblycephala).Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygoteTranscriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae).An integrated transcriptome-wide analysis of cave and surface dwelling Astyanax mexicanus.
P2860
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P2860
Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
description
2009 nî lūn-bûn
@nan
2009 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
Next-generation pyrosequencing ...... rarefaction in gene discovery
@ast
Next-generation pyrosequencing ...... rarefaction in gene discovery
@en
type
label
Next-generation pyrosequencing ...... rarefaction in gene discovery
@ast
Next-generation pyrosequencing ...... rarefaction in gene discovery
@en
prefLabel
Next-generation pyrosequencing ...... rarefaction in gene discovery
@ast
Next-generation pyrosequencing ...... rarefaction in gene discovery
@en
P2093
P2860
P921
P356
P1433
P1476
Next-generation pyrosequencing ...... rarefaction in gene discovery
@en
P2093
Cory R McCormick
James R Jackson
Matthew C Hale
P2860
P2888
P356
10.1186/1471-2164-10-203
P407
P577
2009-04-29T00:00:00Z
P5875
P6179
1039245371