Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.
about
Extinction of hepatitis C virus by ribavirin in hepatoma cells involves lethal mutagenesisViral quasispecies evolutionDevelopment and customization of a color-coded microbeads-based assay for drug resistance in HIV-1 reverse transcriptaseDetection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon SequencingRapid, Sensitive, and Accurate Evaluation of Drug Resistant Mutant (NS5A-Y93H) Strain Frequency in Genotype 1b HCV by Invader AssayDifferences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder VirusAn Efficient Microarray-Based Genotyping Platform for the Identification of Drug-Resistance Mutations in Majority and Minority Subpopulations of HIV-1 QuasispeciesChallenges and opportunities in estimating viral genetic diversity from next-generation sequencing dataSpecific capture and whole-genome sequencing of viruses from clinical samplesShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing dataError baseline rates of five sample preparation methods used to characterize RNA virus populationsHigh-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq).Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection.Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation.PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing dataIndel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing dataHapFABIA: identification of very short segments of identity by descent characterized by rare variants in large sequencing data.Ultra-deep pyrosequencing (UDPS) data treatment to study amplicon HCV minor variants.Improved detection of artifactual viral minority variants in high-throughput sequencing data.Virus genome dynamics under different propagation pressures: reconstruction of whole genome haplotypes of West Nile viruses from NGS dataViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clusteringRVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data.Haplotype and minimum-chimerism consensus determination using short sequence data.A method for counting PCR template molecules with application to next-generation sequencing.Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencingStepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology.Molecular tools for studying HIV transmission in sexual networks.Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation.Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.Inferring viral quasispecies spectra from 454 pyrosequencing reads.A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1.QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.COLD-PCR enrichment of rare cancer mutations prior to targeted amplicon resequencing.Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence dataAnalysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence.Detection of ultra-rare mutations by next-generation sequencing.Efficient error correction for next-generation sequencing of viral amplicons.Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP dataRead length versus depth of coverage for viral quasispecies reconstruction
P2860
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P2860
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.
description
2010 nî lūn-bûn
@nan
2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Error correction of next-gener ...... stimation of HIV quasispecies.
@ast
Error correction of next-gener ...... stimation of HIV quasispecies.
@en
type
label
Error correction of next-gener ...... stimation of HIV quasispecies.
@ast
Error correction of next-gener ...... stimation of HIV quasispecies.
@en
prefLabel
Error correction of next-gener ...... stimation of HIV quasispecies.
@ast
Error correction of next-gener ...... stimation of HIV quasispecies.
@en
P2860
P50
P356
P1476
Error correction of next-gener ...... stimation of HIV quasispecies.
@en
P2093
Martin Däumer
Rolf Klein
P2860
P304
P356
10.1093/NAR/GKQ655
P407
P577
2010-07-29T00:00:00Z