QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
about
Sequencing pools of individuals — mining genome-wide polymorphism data without big fundingAccurate reconstruction of viral quasispecies spectra through improved estimation of strain richnessMetagenomic Assembly: Overview, Challenges and ApplicationsViral quasispecies assembly via maximal clique enumerationDifferences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder VirusDetection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmissionChallenges and opportunities in estimating viral genetic diversity from next-generation sequencing dataIndel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing dataUltra-deep pyrosequencing (UDPS) data treatment to study amplicon HCV minor variants.PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data.ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clusteringThird generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.Accurate viral population assembly from ultra-deep sequencing data.Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence dataRead length versus depth of coverage for viral quasispecies reconstructionViral quasispecies inference from 454 pyrosequencing.The Effect of Interference on the CD8(+) T Cell Escape Rates in HIV.Quality score based identification and correction of pyrosequencing errors.V-Phaser 2: variant inference for viral populations.Improved detection of rare HIV-1 variants using 454 pyrosequencing.Deconvoluting the composition of low-frequency hepatitis C viral quasispecies: comparison of genotypes and NS3 resistance-associated variants between HCV/HIV coinfected hemophiliacs and HCV monoinfected patients in Japan.HIV-1 quasispecies delineation by tag linkage deep sequencingViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing.Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations.Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection.Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.Analysis of intra-host genetic diversity of Prunus necrotic ringspot virus (PNRSV) using amplicon next generation sequencingPersistent HIV-1 replication maintains the tissue reservoir during therapyBenchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.Inference with viral quasispecies diversity indices: clonal and NGS approaches.De novo assembly of viral quasispecies using overlap graphsA penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.Epstein-Barr virus latent membrane protein 1 genetic variability in peripheral blood B cells and oropharyngeal fluids.Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y.Unravelling the dynamics of selection of multiresistant variants to integrase inhibitors in an HIV-1-infected child using ultra-deep sequencing.QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.Separation and assembly of deep sequencing data into discrete sub-population genomes.Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants.Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges.Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids.
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QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
description
2011 nî lūn-bûn
@nan
2011 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
QuRe: software for viral quasi ...... xt-generation sequencing data.
@ast
QuRe: software for viral quasi ...... xt-generation sequencing data.
@en
QuRe: software for viral quasi ...... xt-generation sequencing data.
@nl
type
label
QuRe: software for viral quasi ...... xt-generation sequencing data.
@ast
QuRe: software for viral quasi ...... xt-generation sequencing data.
@en
QuRe: software for viral quasi ...... xt-generation sequencing data.
@nl
prefLabel
QuRe: software for viral quasi ...... xt-generation sequencing data.
@ast
QuRe: software for viral quasi ...... xt-generation sequencing data.
@en
QuRe: software for viral quasi ...... xt-generation sequencing data.
@nl
P2860
P356
P1433
P1476
QuRe: software for viral quasi ...... xt-generation sequencing data.
@en
P2093
Marco Salemi
Mattia C F Prosperi
P2860
P304
P356
10.1093/BIOINFORMATICS/BTR627
P407
P577
2011-11-15T00:00:00Z