Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae - Wikidata - wikimedia - TriplyDB

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

http://www.wikidata.org/entity/Q33742594

about

High-throughput characterization of protein-RNA interactions Post-transcriptional gene regulation in the biology and virulence of Candida albicans Premature termination of GAT1 transcription explains paradoxical negative correlation between nitrogen-responsive mRNA, but constitutive low-level protein production Probing protein quinary interactions by in-cell nuclear magnetic resonance spectroscopy A deep learning framework for modeling structural features of RNA-binding protein targets.Motif-based analysis of large nucleotide data sets using MEME-ChIP.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome Methods for comprehensive experimental identification of RNA-protein interactions Metabolic Adaptation to Nutrients Involves Coregulation of Gene Expression by the RNA Helicase Dbp2 and the Cyc8 Corepressor in Saccharomyces cerevisiae.Coupling mRNA synthesis and decay.The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.CLIPdb: a CLIP-seq database for protein-RNA interactions.Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.Feedback Control of Snf1 Protein and Its Phosphorylation Is Necessary for Adaptation to Environmental Stress.Genome-Wide Analysis of Acute Endurance Exercise-Induced Translational Regulation in Mouse Skeletal Muscle.A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy.RNA regulatory networks diversified through curvature of the PUF protein scaffold.Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p Target selection by natural and redesigned PUF proteins.Protein-RNA networks revealed through covalent RNA marks Snf1-Dependent Transcription Confers Glucose-Induced Decay upon the mRNA Product The Rtr1p CTD phosphatase autoregulates its mRNA through a degradation pathway involving the REX exonucleases.Transcriptome-scale RNase-footprinting of RNA-protein complexes Lives that introns lead after splicing.Emerging connections between RNA and autophagy.RNA structure, binding, and coordination in Arabidopsis.Probing Long Non-coding RNA-Protein Interactions.Transcription facilitates sister chromatid cohesion on chromosomal arms.Evolution of gene regulation during transcription and translation.LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs.Puf3p induces translational repression of genes linked to oxidative stress.Recurrent rewiring and emergence of RNA regulatory networks.The RBPome: where the brains meet the brawn.Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software.Global signatures of protein binding on structured RNAs in Saccharomyces cerevisiae.Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome.Enriching s4 U-RNA Using Methane Thiosulfonate (MTS) Chemistry.Introns provide a platform for intergenic regulatory feedback of RPL22 paralogs in yeast.

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Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

http://www.wikidata.org/entity/Q33742594

description

2013 nî lūn-bûn

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2013 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

Pervasive and dynamic protein ...... me in Saccharomyces cerevisiae

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Pervasive and dynamic protein ...... me in Saccharomyces cerevisiae

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type

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Pervasive and dynamic protein ...... me in Saccharomyces cerevisiae

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Pervasive and dynamic protein ...... me in Saccharomyces cerevisiae

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Pervasive and dynamic protein ...... me in Saccharomyces cerevisiae

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Andy Kong

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James J Moresco

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John K Kim

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John R Yates

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Mallory A Freeberg

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Ting Han

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Yu-Cheng Yang

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Zhi John Lu

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P2860

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Fast and reliable prediction of noncoding RNAs

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

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gb-2013-14-2-r13

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10.1186/GB-2013-14-2-R13

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2

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Saccharomyces cerevisiae

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4053964

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