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Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

http://www.wikidata.org/entity/Q33780815

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PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits Single-feature polymorphism discovery in the barley transcriptome Local regulatory variation in Saccharomyces cerevisiae A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding Current Awareness on Comparative and Functional Genomics Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array.A flexible Bayesian method for detecting allelic imbalance in RNA-seq data Assessing allele-specific expression across multiple tissues from RNA-seq read data Detecting genetic variation in microarray expression data.Prediction of highly expressed genes in microbes based on chromatin accessibility.Cis sequence effects on gene expression Conserved co-expression for candidate disease gene prioritization.Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.Genomic analysis of differentiation between soil types reveals candidate genes for local adaptation in Arabidopsis lyrata.Robust detection and genotyping of single feature polymorphisms from gene expression data.SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip.Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.Single-feature polymorphism discovery by computing probe affinity shape powers Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.High-throughput marker discovery in melon using a self-designed oligo microarray.Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes Homoeolog-specific transcriptional bias in allopolyploid wheat A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus.A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data.The genetic basis of evolutionary change in gene expression levels.Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast 'maskBAD'--a package to detect and remove Affymetrix probes with binding affinity differences.Analysis of allelic differential expression in human white blood cells.Adding confidence to gene expression clustering.Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis.DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies.Mapping translocation breakpoints using a wheat microarray.SFP genotyping from affymetrix arrays is robust but largely detects cis-acting expression regulators.Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information.Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution.A new strategy to reduce allelic bias in RNA-Seq readmapping.Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies.An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.

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P2860

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays

http://www.wikidata.org/entity/Q33780815

description

2005 nî lūn-bûn

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2005 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2005 թվականի փետրվարին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

@zh-hk

2005年論文

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2005年論文

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2005年论文

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name

Simultaneous genotyping, gene- ...... on with oligonucleotide arrays

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Simultaneous genotyping, gene- ...... on with oligonucleotide arrays

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Simultaneous genotyping, gene- ...... on with oligonucleotide arrays

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Genome Research

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Simultaneous genotyping, gene- ...... on with oligonucleotide arrays

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P2093

Erin N Smith

http://www.w3.org/2001/XMLSchema#string

Jacqueline Whittle

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James Ronald

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Joshua M Akey

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Leonid Kruglyak

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P2860

Summaries of Affymetrix GeneChip probe level data

Genetics of gene expression surveyed in maize, mouse and man

Genetic dissection of transcriptional regulation in budding yeast

Allelic variation in gene expression is common in the human genome.

Allele-specific gene expression uncovered.

A model of molecular interactions on short oligonucleotide microarrays.

Genetic inheritance of gene expression in human cell lines.

In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading.

Large-scale identification of single-feature polymorphisms in complex genomes.

Detection of regulatory variation in mouse genes.

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284-291

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10.1101/GR.2850605

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2

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15

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8045804

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15687292

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546530

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