Protein folding pathways from replica exchange simulations and a kinetic network model. - Wikidata - wikimedia - TriplyDB

Protein folding pathways from replica exchange simulations and a kinetic network model.

Protein folding pathways from replica exchange simulations and a kinetic network model.

http://www.wikidata.org/entity/Q33784400

about

Taming the complexity of protein folding Modeling conformational ensembles of slow functional motions in Pin1-WW Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece Calculation of the free energy and cooperativity of protein folding Using Markov state models to study self-assembly Integrated Modeling Program, Applied Chemical Theory (IMPACT)Inherent structure versus geometric metric for state space discretization.Reversible folding simulation by hybrid Hamiltonian replica exchange.Reactive flux and folding pathways in network models of coarse-grained protein dynamics.The AGBNP2 Implicit Solvation Model.Protein folded states are kinetic hubs.Network models for molecular kinetics and their initial applications to human health Fibril elongation by Aβ(17-42): kinetic network analysis of hybrid-resolution molecular dynamics simulations Recovering kinetics from a simplified protein folding model using replica exchange simulations: a kinetic network and effective stochastic dynamics.Asynchronous replica exchange for molecular simulations Simple continuous and discrete models for simulating replica exchange simulations of protein folding.Mechanism of fiber assembly: treatment of Aβ peptide aggregation with a coarse-grained united-residue force field.Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides.Free-energy landscape of the GB1 hairpin in all-atom explicit solvent simulations with different force fields: Similarities and differences The stability of monomeric intermediates controls amyloid formation: Abeta25-35 and its N27Q mutant.Building Markov state models with solvent dynamics.Kinetic network study of the diversity and temperature dependence of Trp-Cage folding pathways: combining transition path theory with stochastic simulations.The temperature intervals with global exchange of replicas empirical accelerated sampling method: parameter sensitivity and extension to a complex molecular system.Computational design and experimental discovery of an antiestrogenic peptide derived from alpha-fetoprotein Insights into the dynamics of HIV-1 protease: a kinetic network model constructed from atomistic simulations.Microscopic events in β-hairpin folding from alternative unfolded ensembles Understanding ensemble protein folding at atomic detail Predicting the folding pathway of engrailed homeodomain with a probabilistic roadmap enhanced reaction-path algorithm Modeling heme proteins using atomistic simulations.Ensemble-based characterization of unbound and bound states on protein energy landscape.NMR relaxation in proteins with fast internal motions and slow conformational exchange: model-free framework and Markov state simulations COCIS: Markov processes in single molecule fluorescence.How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory TIGER2: an improved algorithm for temperature intervals with global exchange of replicas.Graph representation of protein free energy landscape Generative models of conformational dynamics.Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models.Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analyses.Computational approaches for the design of peptides with anti-breast cancer properties.Folding thermodynamics of β-hairpins studied by replica-exchange molecular dynamics simulations.

P2860

Q24617692-62AF2EBE-EA3F-4FF1-868E-40CC74E82354 Q27334291-4D4CB069-6F13-41C8-B2E9-C013C8CE9BD2 Q28238258-EE64E178-4502-4BD7-A44F-49DF9B658757 Q28469199-E497CCEA-AC75-4ADC-A500-BDA55DF7B760 Q28658682-C5DB83CF-5CF2-4912-8F7C-FC86D02A9F4C Q28751619-6DDFD129-6392-4F0B-B34D-BD81B869F72E Q30746516-4494A63B-7909-4383-A2B5-850FCDCB3131 Q31154801-E7FCE42D-8DA3-4009-B8D6-CCD71672EE06 Q33703260-2ED73E42-1900-42D5-9818-0526BE512AE0 Q33803629-1A69D625-02F1-4268-8FB8-6A8D7B0BC08B Q33934376-0BC225D0-077A-46D8-9B61-B616C1048C32 Q34112333-1C904531-FE68-409F-AAFE-AB234809A746 Q34145203-9B7603F9-3408-43C0-8AC7-DF64E0B1231D Q34289297-A2C9C52B-F56A-4F22-A823-7C955852CF57 Q34296246-34E28A1C-9AB2-4B0B-84AB-E8C8F2E86B52 Q34296935-020D5E29-0439-4D44-AA4C-807779692EDD Q34311672-A956B98B-C02C-452F-84EB-BA593CB626FD Q34398554-4C7BD28B-3074-4F14-9748-9138296EC43A Q34492990-17376045-FA33-48E1-98B6-3640FF957482 Q34546859-ECED7390-68F8-49F0-96B5-7AF3B598D5BA Q34569339-1EF4A9F7-94F6-4CA4-BF61-317BC52930D6 Q34689010-2D8DC4FD-BB0D-42C6-AB3C-980DE819FF42 Q34718562-F8BCFDB6-8D73-4B95-B13A-90275C1A1A62 Q34744726-6A66C2D0-F2F3-4526-9B3B-28312C5DFA91 Q35048158-302DD212-B93E-4129-8CCE-BDE271CC96F4 Q35090961-5CD1BF8A-D6C2-4D5F-BBCF-DFD5A4A7B188 Q35128687-2ACD619F-F163-4E56-9B13-0F459389DC3B Q36459157-68516522-B4A8-4C4A-8654-1571C40D06C4 Q36675200-BFE034DB-D68F-4CE6-9BDD-1765750BA0A1 Q36949881-6AB9E2E1-6141-4C01-A8C0-E79C8F060904 Q37055280-3DC87E1D-61C8-4B1A-8C98-DF6D11F2B6F8 Q37234784-ABE0D6DF-F918-417A-B08C-D70F60A4BF26 Q37255668-58EE2DF9-A595-45B5-A035-D465CFE27CFD Q37285420-C4C83884-DF7D-4254-8976-86F1254FE361 Q37350472-FEBAACAD-85CB-41F3-9300-189DF2279273 Q38180422-142B6A01-CA3D-409C-BF6C-BC82F9BF2C0F Q39460391-C9A71EC9-293B-4D51-93DE-6852ADBB7B27 Q39721655-ABE3679E-3068-4F5D-B98C-B24C2D98C022 Q39991332-D25F5F32-2DE9-46AE-8AA7-65E4218A8A44 Q40940259-2CA737A7-582F-4C4A-94D1-424017AFEFA3

P2860

Protein folding pathways from replica exchange simulations and a kinetic network model.

http://www.wikidata.org/entity/Q33784400

description

2005 nî lūn-bûn

@nan

2005 թուականի Մարտին հրատարակուած գիտական յօդուած

@hyw

2005 թվականի մարտին հրատարակված գիտական հոդված

@hy

2005年の論文

@ja

2005年論文

@yue

2005年論文

@zh-hant

2005年論文

@zh-hk

2005年論文

@zh-mo

2005年論文

@zh-tw

2005年论文

@wuu

name

Protein folding pathways from replica exchange simulations and a kinetic network model.

@ast

Protein folding pathways from replica exchange simulations and a kinetic network model.

@en

type

label

Protein folding pathways from replica exchange simulations and a kinetic network model.

@ast

Protein folding pathways from replica exchange simulations and a kinetic network model.

@en

prefLabel

Protein folding pathways from replica exchange simulations and a kinetic network model.

@ast

Protein folding pathways from replica exchange simulations and a kinetic network model.

@en

P1433

Q33784400-915EAAF6-BB47-4974-856C-33A03A35FB95

P1476

Q33784400-3F657A9D-A6BD-4E51-A57B-63C21C1F8945

P2093

Q33784400-087BF846-920D-4314-A894-7789614E1B90

Q33784400-16D9E7C0-ED13-41DA-960C-99A65923259D

Q33784400-1D6F4485-E871-4A3A-A944-4DA596440222

Q33784400-BF4AF38C-76DF-45E1-93E6-A176ED51DA12

P2860

Q33784400-06C8E469-29A3-472E-AF26-C1D7DA32F772

Q33784400-2076093B-A68F-4D29-A667-82FCCDE075AD

Q33784400-286053D0-8E32-4455-AD4D-80B7D05D3C71

Q33784400-31A45809-9C0B-4790-8037-4F943793D5B4

Q33784400-3F971A82-ADDF-4C4F-8948-6DEDDD1F643E

Q33784400-441BEFEC-2852-4782-8C37-AEE84EAA90E1

Q33784400-4980A2E8-FA9C-4783-B4CF-68E9C0653914

Q33784400-4FA851D4-3F0A-4DDC-8FFA-195B19A1C2DA

Q33784400-500CC3A3-B3D9-4336-88A8-181A3DCFA785

Q33784400-5C7945DB-52C3-428F-A156-3678440258C8

P304

Q33784400-B8709EFF-378B-47B8-9C21-698857EDDF76

P31

Q33784400-5F354860-FB08-4041-91CB-22112BA84BE4

P356

Q33784400-9FBC8572-189E-4810-9988-E24D79DE54AF

P407

Q33784400-3190799D-5B19-44B5-96CC-B85D6EA9B182

P433

Q33784400-B05A89D4-9047-4DAA-9CD3-80C63F5B2E31

P478

Q33784400-62B15F7D-F675-49CC-8564-178441AAA0BB

P577

Q33784400-89EC8ADD-991B-46E8-8DB3-0C37AF036FAB

P5875

Q33784400-966E1E06-A441-46FD-9470-2AC290E5F26E

P698

Q33784400-5678899C-1F10-4D7F-9987-CDCC6E094E5E

P921

Q33784400-9FF3E8A4-4E58-4F04-B283-6E19EB1BDBDF

P932

Q33784400-A8F76AEC-4329-447C-9BE6-F8EF681BBFE1

P356

PNAS.0408970102

P1433

Proceedings of the National Academy of Sciences of the United States of America

P1476

Protein folding pathways from replica exchange simulations and a kinetic network model.

@en

P2093

Anthony K Felts

http://www.w3.org/2001/XMLSchema#string

Emilio Gallicchio

http://www.w3.org/2001/XMLSchema#string

Michael Andrec

http://www.w3.org/2001/XMLSchema#string

Ronald M Levy

http://www.w3.org/2001/XMLSchema#string

P2860

Polymer principles and protein folding

Understanding protein folding via free-energy surfaces from theory and experiment

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

Knowledge-based protein secondary structure assignment

On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute-solvent interaction energy.

Theory of protein folding: the energy landscape perspective.

The free energy landscape for beta hairpin folding in explicit water.

Fast kinetics and mechanisms in protein folding.

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

P304

6801-6806

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1073/PNAS.0408970102

http://www.w3.org/2001/XMLSchema#string

P407

P433

19

http://www.w3.org/2001/XMLSchema#string

P478

102

http://www.w3.org/2001/XMLSchema#string

P577

2005-03-30T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

7936065

http://www.w3.org/2001/XMLSchema#string

P698

15800044

http://www.w3.org/2001/XMLSchema#string

P921

protein folding

P932

1100763

http://www.w3.org/2001/XMLSchema#string