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Reproducibility and quantitation of amplicon sequencing-based detection

Reproducibility and quantitation of amplicon sequencing-based detection

http://www.wikidata.org/entity/Q33827930

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High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats Microbial diversity in the era of omic technologies Targeted RNA-sequencing with competitive multiplex-PCR amplicon libraries Pros and cons of ion-torrent next generation sequencing versus terminal restriction fragment length polymorphism T-RFLP for studying the rumen bacterial community Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming Changes in N-transforming archaea and bacteria in soil during the establishment of bioenergy crops Anaerobic microbial community response to methanogenic inhibitors 2-bromoethanesulfonate and propynoic acid 18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species.Species-level analysis of DNA sequence data from the NIH Human Microbiome Project.Denoising PCR-amplified metagenome data.Characterizing changes in soil bacterial community structure in response to short-term warming.Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover.Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils.Temperature mediates continental-scale diversity of microbes in forest soils.Crude oil as a microbial seed bank with unexpected functional potentials Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.Analysis of run-to-run variation of bar-coded pyrosequencing for evaluating bacterial community shifts and individual taxa dynamics.Alteration of gut microbiota in association with cholesterol gallstone formation in mice.Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa.Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments Characterization of the bacterial communities of life stages of free living lone star ticks (Amblyomma americanum)Barcoded primers used in multiplex amplicon pyrosequencing bias amplification.Macrophyte species drive the variation of bacterioplankton community composition in a shallow freshwater lake Influence of DNA extraction and PCR amplification on studies of soil fungal communities based on amplicon sequencing.Metagenomic analysis of a stable trichloroethene-degrading microbial community.Low sequencing efforts bias analyses of shared taxa in microbial communities.Molecular ecological network analyses.Comparative survey of rumen microbial communities and metabolites across one caprine and three bovine groups, using bar-coded pyrosequencing and ¹H nuclear magnetic resonance spectroscopy Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability.The Microbial Ferrous Wheel in a Neutral pH Groundwater Seep.Correlation of the abundance of betaproteobacteria on mineral surfaces with mineral weathering in forest soils Identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles.Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes Changes in cystic fibrosis airway microbiota at pulmonary exacerbation.Spatial and species variations in bacterial communities associated with corals from the Red Sea as revealed by pyrosequencing.Abiotic factors shape microbial diversity in Sonoran Desert soils PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.

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Reproducibility and quantitation of amplicon sequencing-based detection

http://www.wikidata.org/entity/Q33827930

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2011 nî lūn-bûn

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2011 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2011 թվականի փետրվարին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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Reproducibility and quantitation of amplicon sequencing-based detection

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Reproducibility and quantitation of amplicon sequencing-based detection

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Reproducibility and quantitation of amplicon sequencing-based detection

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Reproducibility and quantitation of amplicon sequencing-based detection

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Reproducibility and quantitation of amplicon sequencing-based detection

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Reproducibility and quantitation of amplicon sequencing-based detection

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The ISME Journal

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Reproducibility and quantitation of amplicon sequencing-based detection

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Jianping Xie

http://www.w3.org/2001/XMLSchema#string

Jizhong Zhou

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Joy D Van Nostrand

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Liyou Wu

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Qichao Tu

http://www.w3.org/2001/XMLSchema#string

Xiaoyang Zhi

http://www.w3.org/2001/XMLSchema#string

Ye Deng

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Yi-Huei Jiang

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Yunfeng Yang

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Zhili He

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P2860

Query-dependent banding (QDB) for faster RNA similarity searches

Genome sequencing in microfabricated high-density picolitre reactors

Using pyrosequencing to shed light on deep mine microbial ecology

Pyrosequencing enumerates and contrasts soil microbial diversity

Microbial diversity in the deep sea and the underexplored "rare biosphere"

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

Accuracy and quality of massively parallel DNA pyrosequencing.

Acclimatization of soil respiration to warming in a tall grass prairie

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1303-1313

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10.1038/ISMEJ.2011.11

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8

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5

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2011-02-24T00:00:00Z

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232787910

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1052803559

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21346791

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reproducibility

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3146266

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