Empirical establishment of oligonucleotide probe design criteria
about
Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolutionThe incredible shrinking world of DNA microarraysSelection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation.A functional gene array for detection of bacterial virulence elementsFunctional ecology of an Antarctic Dry ValleySeeds for effective oligonucleotide designAn empirical study of choosing efficient discriminative seeds for oligonucleotide designMicroarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells.Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction.Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis.A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray.Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.A high-throughput pipeline for designing microarray-based pathogen diagnostic assays.The T7-primer is a source of experimental bias and introduces variability between microarray platformsMicroarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico.PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.Design and analysis of mismatch probes for long oligonucleotide microarraysIn silico microarray probe design for diagnosis of multiple pathogens.Comparative genomics of wild type yeast strains unveils important genome diversityArchitecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approachDesign of 240,000 orthogonal 25mer DNA barcode probes.Using R in Taverna: RShell v1.2.Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis.sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands.A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.Microarray-based gene expression profiling to elucidate effectiveness of fermented Codonopsis lanceolata in mice.Application of equilibrium models of solution hybridization to microarray design and analysisA novel cassette method for probe evaluation in the designed biochips.Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.Evaluating the performance of oligonucleotide microarrays for bacterial strains with increasing genetic divergence from the reference strainDynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquiferExpression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains.Minimizing off-target signals in RNA fluorescent in situ hybridization.Use of microarrays with different probe sizes for monitoring gene expression.Sequencing and computational approaches to identification and characterization of microbial organismsImprovement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications
P2860
Q21092436-174CB3D7-C41C-4214-945A-E38AEDCE7072Q24651216-0BB913E7-ACBF-4A12-BB6D-6A03449AEC05Q24816228-BB8C01C4-317D-463D-BFD4-F7187673C4B4Q28472715-4E6C1F56-AEF8-4E10-B788-A921ED4AACBCQ28682535-DEC0ACAF-1BDE-4279-86C5-D3DCAF6F6F53Q30501983-BD5DE2F9-E135-49D8-8EE4-4D59CEC896A2Q30951015-C4EF72F0-85A9-4EB3-85C5-DA7DC633CD39Q31061401-287F1D97-EC37-45B4-9876-617698220788Q31147675-9712A700-CB93-4F43-BCA4-A26A30C572B2Q31149722-733EB037-6996-46E2-8B03-01B4603D6EE3Q33238897-F63F9E56-FB86-4AFA-924E-AE37367908F4Q33288195-BC13B58E-9EF9-4297-9F55-CF7B165CF3DAQ33299609-C410068B-713D-4552-A963-41C0625997CBQ33327576-ECD01817-5E52-40C0-AC7B-B5847C8F17B2Q33330266-283AE982-E931-417E-8BED-5E4874E58983Q33339259-B4DFCA12-5D02-41F7-9FF3-D8938BB7030BQ33346726-66F7457F-548C-4393-9448-87868EDD5B51Q33377586-6FCE9549-ED1D-47BD-BCCD-90917C6F3528Q33378352-0FD697FD-A7D4-4D21-8722-01E1140D271DQ33382530-0F96A5FA-A925-4AA7-852F-6B5C9C56AFDEQ33385517-D3D75335-9EC1-4F1C-93E7-33C0CCC8B63AQ33403158-CC22F453-0682-4201-928B-0F4F33AF1AD5Q33483020-5750CDF2-3248-46FF-A8D8-F0AB551BBB49Q33483748-AFCE7891-2A3F-4A41-A4F3-80B265F4A777Q33483780-01CF18DE-93B6-454F-9A84-83D051FDBC57Q33495945-299BFDE1-1159-441E-AA10-5151CC4DDF3EQ33516189-D357BCF8-0941-4C4B-A504-09507B3199A0Q33521018-4B747799-574F-4D42-A1A3-3EF800B16457Q33567621-8132B206-788F-40C7-93F3-23ADA9C9667FQ33580529-06AFA833-2A7A-4909-8982-DD37BE5DACE2Q33604740-FF704B49-B122-430B-97E4-B9E0EC925B3CQ33712181-C9F2B078-569E-48B7-A7F3-D3597C085878Q33718484-C3A5D9B1-E1BC-4F4B-9173-95BA5D995D4AQ33825851-EA2CBB70-7D80-4F7A-B73A-2F63339B3496Q33875198-23D037D9-B2CC-4A4E-8E18-54E851AEA607Q33877872-9ACE24F6-9501-4247-8C6B-98B9D7E650EEQ33889338-A0503BAD-EE7E-4162-9CB0-6D09EC72CCABQ33996004-8DA09D06-0B43-402F-BB80-3FC7C899FEFCQ34102591-0C9E82A5-F25E-4682-BF6E-788260DD0FCDQ34431213-B4096D77-D244-49BB-9360-619CFB92DF11
P2860
Empirical establishment of oligonucleotide probe design criteria
description
2005 nî lūn-bûn
@nan
2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Empirical establishment of oligonucleotide probe design criteria
@ast
Empirical establishment of oligonucleotide probe design criteria
@en
type
label
Empirical establishment of oligonucleotide probe design criteria
@ast
Empirical establishment of oligonucleotide probe design criteria
@en
prefLabel
Empirical establishment of oligonucleotide probe design criteria
@ast
Empirical establishment of oligonucleotide probe design criteria
@en
P2093
P2860
P1476
Empirical establishment of oligonucleotide probe design criteria
@en
P2093
Jizhong Zhou
Matthew W Fields
Xingyuan Li
P2860
P304
P356
10.1128/AEM.71.7.3753-3760.2005
P407
P50
P577
2005-07-01T00:00:00Z