CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters - Wikidata - wikimedia - TriplyDB

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

http://www.wikidata.org/entity/Q34034120

about

Molecular control of activation and priming in macrophages Preparing the first responders: building the inflammatory transcriptome from the ground up The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing Massively parallel cis-regulatory analysis in the mammalian central nervous system A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.Identifying and Reducing Systematic Errors in Chromosome Conformation Capture Data Pasha: a versatile R package for piling chromatin HTS data.Genomic organization of human transcription initiation complexes.Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers.Fine-tuning of epigenetic regulation with respect to promoter CpG content in a cell type-specific manner.WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Fundamental diversity of human CpG islands at multiple biological levels.High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq.Nucleosome positioning: resources and tools online.Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation.Hydroxymethylated cytosines are associated with elevated C to G transversion rates.Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters Regulation of the NF-κB-Mediated Transcription of Inflammatory Genes.Understanding nucleosome dynamics and their links to gene expression and DNA replication.Site- and allele-specific polycomb dysregulation in T-cell leukaemia Transcriptional and epigenetic networks of helper T and innate lymphoid cells.Divergent transcription is associated with promoters of transcriptional regulators.Human promoters are intrinsically directional.Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons Differential acetylation of histone H3 at the regulatory region of OsDREB1b promoter facilitates chromatin remodelling and transcription activation during cold stress.Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells Transcriptional control of inflammatory responses.Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection.Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin RAG Represents a Widespread Threat to the Lymphocyte Genome.A widespread role of the motif environment in transcription factor binding across diverse protein families Evidence of selection for an accessible nucleosomal array in human Linking Core Promoter Classes to Circadian Transcription Genomic landscape of CpG rich elements in human Modeling co-occupancy of transcription factors using chromatin features Two independent transcription initiation codes overlap on vertebrate core promoters

P2860

Q26774972-48735E5C-E87F-44B4-B4B5-D2662ED3FF08 Q26849425-BBE6B12C-F3A0-485D-843E-8C926DEE23C3 Q28594693-7E4DC8FA-21D8-4200-9A50-083C691740CD Q28973610-EDE64313-0429-4FB7-A601-AD13C1C006B3 Q30982429-CE269380-7267-49CF-9E8F-F4D7EC2020A1 Q31034469-7BF155F6-7071-42D1-A5CB-FEBCD36E24A0 Q31092332-C629A361-5905-41F3-AAF3-1BD18E8B0DAA Q33600611-D8CE2635-7DB1-4B6C-95B9-D2557493A257 Q33703908-9EFF2957-77EA-40E5-9710-008AED553F66 Q33723246-000FBAA1-9E0C-47B6-80A3-15DAAA3D0D02 Q33779188-4B67F63B-E142-4EC7-9A7E-E54E8419FAEC Q33789914-6DB42C3C-8308-4718-B9F5-284221E632A1 Q34000374-1B887D22-DE2E-4D01-A107-0FDA068734EE Q34043754-1C048C3D-F85A-4C47-83DD-C9AB799EB0FF Q34045010-4B4689CD-1071-4DE3-A67F-0ED79A7409E1 Q34045615-880834FF-8B34-40E3-8215-D27AF6B2E2A2 Q34165693-49C792A5-5F15-4F51-AA81-EE874193F806 Q34342266-0707D03B-B2B2-4978-9DD3-F24B88608D7B Q34409102-7864CD73-FA7A-46C2-9AE9-899C780614AE Q34557106-61A393F1-DB39-40F6-9FA0-B1D2EB463B7A Q35050495-326304DE-BBDC-4F1C-B4D7-6115D7CAEAD7 Q35064355-A44F47CC-488C-4138-8E09-A8900E05CD48 Q35074692-4BFBE17A-69CE-42BC-B569-1E3EA4806661 Q35108213-2C85D64D-257C-4084-9E57-72F7D6C655B9 Q35128046-C44A1D74-7C74-486F-8857-C8AAB2D40525 Q35129174-DF1F496C-57F1-4458-BF66-26B37444F11A Q35171354-CEE51E5B-F208-4F77-ACD5-BB11ABCC120D Q35190312-D0907D08-E715-4B82-89B4-69FB9C1E48D7 Q35530039-3600E0FE-6EB2-42BE-90FB-B2A0BB0C9157 Q35548956-A0C5EEE1-BB3C-4634-9AEF-75DD17FA98F2 Q35566781-0766D59A-C818-475B-A737-70492126418D Q35750946-55331529-9147-4CE7-9985-AA6A17760485 Q35762970-DE338E99-01F6-428A-96A5-39C03FE788EB Q35958144-FBDFE111-96CD-448F-BD48-C4933145FF66 Q36032482-71E33F70-6EC3-4986-97D9-7D037BDE5FFA Q36089885-8ACA57B1-4DC6-4CCB-A4CC-C717B9B6DC39 Q36098618-1F73620C-828E-480C-950C-6388C0A5346A Q36294906-99FF4BC0-54BC-4E36-AFDF-C54659D70492 Q36701050-8818015A-4784-490C-8A38-CF215D737E32 Q36763129-D87E62EC-1DF5-431B-B475-CE5BC317AD4C

P2860

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

http://www.wikidata.org/entity/Q34034120

description

2012 nî lūn-bûn

@nan

2012 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի հոտեմբերին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

CpG islands and GC content dic ...... manner at mammalian promoters

@ast

CpG islands and GC content dic ...... manner at mammalian promoters

@en

CpG islands and GC content dic ...... manner at mammalian promoters

@nl

type

label

CpG islands and GC content dic ...... manner at mammalian promoters

@ast

CpG islands and GC content dic ...... manner at mammalian promoters

@en

CpG islands and GC content dic ...... manner at mammalian promoters

@nl

prefLabel

CpG islands and GC content dic ...... manner at mammalian promoters

@ast

CpG islands and GC content dic ...... manner at mammalian promoters

@en

CpG islands and GC content dic ...... manner at mammalian promoters

@nl

P1433

Q34034120-F88890BD-C7AE-4681-ABBE-83954E485EC0

P1476

Q34034120-02BEA905-C46D-49C4-8F3A-A4A68CE1E62D

P2093

Q34034120-5F69B3F4-0FCD-468C-A687-764F10C1E258

Q34034120-8FDA4A18-2990-4537-AF8A-1F678C91F76B

Q34034120-92083C1A-861A-41EB-96E5-203E3301E8E3

Q34034120-AD8FBA3D-F0C5-4747-A076-C17F502DD9BE

Q34034120-BDC10FE6-B03F-421D-92AC-3CAE5A60A9E4

Q34034120-D02EE829-91B7-4D5C-A42B-25784512925D

Q34034120-D3F316AB-1B2A-4808-9761-4A1E664E5E70

Q34034120-E26475C0-E2F0-42F5-9AC4-5F95B843F456

P2860

Q34034120-0403445C-9641-431B-AEF5-47AC53FF7C79

Q34034120-109D99B7-EBEB-4205-8FEF-6F2E42189A40

Q34034120-19BF2D50-719F-43E9-BAB3-8A145A5B87D5

Q34034120-34744573-CBF4-418B-AC16-07DD2C86C118

Q34034120-369C8C90-2367-4E1C-9F43-B60C2B72FC2F

Q34034120-40E9B67E-C19F-4E6A-B1DC-F65FAB23401B

Q34034120-4208F7E7-84C4-4B5A-878C-0FABF35A4E31

Q34034120-4890A5D9-1C93-48A7-A774-2277C4A50901

Q34034120-4AE43367-7823-4AE5-8A3E-63865A079906

Q34034120-4E1327ED-CFCB-4025-87CB-8B0B7058CFCA

P304

Q34034120-B5131C32-4E41-4A91-BCF9-94EB45BAA627

P31

Q34034120-4DEA5169-CE54-4B77-A887-F6C74F2B1AE7

P356

Q34034120-CF786DC1-A125-4ACB-BEF9-58173D8DF1AF

P433

Q34034120-E837DD9B-5AC1-4AB1-9E8A-49EFA979F0FA

P478

Q34034120-19C61727-6087-41F8-A383-C4633CC5D02C

P50

Q34034120-2B5799D5-A51D-4F5C-84A6-39DEFFA927CF

Q34034120-4102E85A-B46F-47A3-AA97-93E3FB57D3AF

Q34034120-CF7E8CEB-6401-4C8B-855E-CFE11DA0ADA9

P577

Q34034120-EB26E42E-7C35-4870-88FC-7E44D715AD43

P5875

Q34034120-455DB492-72A4-4BAF-AA05-C9ECE8A338F2

P698

Q34034120-37EC038D-38F5-41AA-86D5-E23206FEF80E

P932

Q34034120-2126FC38-1FE5-41C0-8A25-0509971A5C52

P356

P1433

Genome Research

P1476

CpG islands and GC content dic ...... manner at mammalian promoters

@en

P2093

Charlène Innocenti

http://www.w3.org/2001/XMLSchema#string

Frederic Koch

http://www.w3.org/2001/XMLSchema#string

Ivo Gut

http://www.w3.org/2001/XMLSchema#string

Marta Gut

http://www.w3.org/2001/XMLSchema#string

Nicolas Descostes

http://www.w3.org/2001/XMLSchema#string

Pierre Cauchy

http://www.w3.org/2001/XMLSchema#string

Pierre Ferrier

http://www.w3.org/2001/XMLSchema#string

Romain Fenouil

http://www.w3.org/2001/XMLSchema#string

P2860

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix.

CpG islands recruit a histone H3 lysine 36 demethylase

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

RNA polymerase II-TFIIB structure and mechanism of transcription initiation

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

Polycomb complexes repress developmental regulators in murine embryonic stem cells

Divergent transcription from active promoters

Dynamic regulation of nucleosome positioning in the human genome

All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues.

P304

2399-2408

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1101/GR.138776.112

http://www.w3.org/2001/XMLSchema#string

P433

12

http://www.w3.org/2001/XMLSchema#string

P478

22

http://www.w3.org/2001/XMLSchema#string

P50

Salvatore Spicuglia

Joaquin Zacarias Cabeza

Jean-Christophe Andrau

P577

2012-10-25T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

232705667

http://www.w3.org/2001/XMLSchema#string

P698

23100115

http://www.w3.org/2001/XMLSchema#string

P932

3514669

http://www.w3.org/2001/XMLSchema#string