Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
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Use of ChIP-Seq data for the design of a multiple promoter-alignment methodPyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocolsHog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodelingSex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual DifferentiationLoss of dE2F compromises mitochondrial functionPAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeastA Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.Assessing Computational Steps for CLIP-Seq Data Analysis.Bioinformatic tools for analysis of CLIP ribonucleoprotein dataRNA stores tau reversibly in complex coacervatesExposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoniArgonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteinsA semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection.Design and bioinformatics analysis of genome-wide CLIP experiments.RNA regulatory networks diversified through curvature of the PUF protein scaffold.From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP dataHighly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors.Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex.Epigenetic and transcriptional signatures of stable versus plastic differentiation of proinflammatory γδ T cell subsets.The RNA-binding profile of Acinus, a peripheral component of the exon junction complex, reveals its role in splicing regulationExpression of polycomb targets predicts breast cancer prognosis.Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements.FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons.CLIP: viewing the RNA world from an RNA-protein interactome perspective.Revealing protein-lncRNA interactionp27Kip1, PCAF and PAX5 cooperate in the transcriptional regulation of specific target genes.A GC-rich sequence feature in the 3' UTR directs UPF1-dependent mRNA decay in mammalian cells.Frequency and mitotic heritability of epimutations in Schistosoma mansoni.Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolutionDynamic transitions in RNA polymerase II density profiles during transcription termination.Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs.Evidence for miRNA-mediated modulation of the host transcriptome in cnidarian-dinoflagellate symbiosis.ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts.Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq.Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum.Parent-of-Origin Dependent Gene Expression in Male and Female Schistosome Parasites.SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.
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Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
description
2011 nî lūn-bûn
@nan
2011 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@ast
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@en
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@nl
type
label
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@ast
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@en
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@nl
prefLabel
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@ast
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@en
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@nl
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P50
P356
P1433
P1476
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
@en
P2093
Juan González-Vallinas
Sonja Althammer
P2860
P304
P356
10.1093/BIOINFORMATICS/BTR570
P407
P577
2011-10-12T00:00:00Z