Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations
about
Close encounters with DNAHeat conductivity of DNA double helixLoop dependence of the stability and dynamics of nucleic acid hairpins.Ensemble simulations: folding, unfolding and misfolding of a high-efficiency frameshifting RNA pseudoknotPredicting secondary structural folding kinetics for nucleic acids.Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics.Exploring the helix-coil transition via all-atom equilibrium ensemble simulationsDoes water play a structural role in the folding of small nucleic acids?Exploring the complex folding kinetics of RNA hairpins: I. General folding kinetics analysis.Exploring the complex folding kinetics of RNA hairpins: II. Effect of sequence, length, and misfolded states.Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.A kinetic zipper model with intrachain interactions applied to nucleic acid hairpin folding kineticsMolecular dynamics simulations of RNA: an in silico single molecule approach.Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations.Probing the structural hierarchy and energy landscape of an RNA T-loop hairpinRNA folding: conformational statistics, folding kinetics, and ion electrostatics.Unfolding and melting of DNA (RNA) hairpins: the concept of structure-specific 2D dynamic landscapes.Free-energy landscape of a hyperstable RNA tetraloop.Space warping order parameters and symmetry: application to multiscale simulation of macromolecular assemblies.DNA hairpin stabilization on a hydrophobic surface.Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model.Finding Our Way in the Dark Proteome.Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide.Mechanism of the hairpin folding transformation of thymine-cytosine-rich oligonucleotides induced by Hg(II) and Ag(I) ions.Molecular modeling of nucleic Acid structure: electrostatics and solvation.Introducing Charge Hydration Asymmetry into the Generalized Born Model.Coarse-grained prediction of RNA loop structures.Free energy profile of RNA hairpins: a molecular dynamics simulation study.Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling.NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops.Thermodynamics and kinetics of the hairpin ribozyme from atomistic folding/unfolding simulations.Computing the conformational entropy for RNA folds.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Evaluation of efficiency of reference potential spatial warping algorithm in conformational sampling of peptides.Molecular simulation of multistate peptide dynamics: a comparison between microsecond timescale sampling and multiple shorter trajectories.Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknotPulling of double-stranded DNA by atomic force microscopy: a simulation in atomistic details
P2860
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P2860
Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations
description
2003 nî lūn-bûn
@nan
2003 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年学术文章
@wuu
2003年学术文章
@zh-cn
2003年学术文章
@zh-hans
2003年学术文章
@zh-my
2003年学术文章
@zh-sg
2003年學術文章
@yue
name
Insights into nucleic acid con ...... arallel stochastic simulations
@ast
Insights into nucleic acid con ...... arallel stochastic simulations
@en
Insights into nucleic acid con ...... arallel stochastic simulations
@nl
type
label
Insights into nucleic acid con ...... arallel stochastic simulations
@ast
Insights into nucleic acid con ...... arallel stochastic simulations
@en
Insights into nucleic acid con ...... arallel stochastic simulations
@nl
prefLabel
Insights into nucleic acid con ...... arallel stochastic simulations
@ast
Insights into nucleic acid con ...... arallel stochastic simulations
@en
Insights into nucleic acid con ...... arallel stochastic simulations
@nl
P2093
P2860
P1433
P1476
Insights into nucleic acid con ...... arallel stochastic simulations
@en
P2093
Bradley J Nakatani
Eric J Sorin
Vijay S Pande
P2860
P304
P356
10.1016/S0006-3495(03)74520-2
P407
P577
2003-08-01T00:00:00Z