Free energy profile of RNA hairpins: a molecular dynamics simulation study.
about
Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structureSolution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domainRecent Developments and Applications of the CHARMM force fieldsBlind tests of RNA nearest-neighbor energy predictionRNA and protein 3D structure modeling: similarities and differences.RNA structure refinement using NMR solvent accessibility data.Structural fidelity and NMR relaxation analysis in a prototype RNA hairpinMolecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational ChangeExcited states of ribosome translocation revealed through integrative molecular modeling.A kinetic zipper model with intrachain interactions applied to nucleic acid hairpin folding kineticsSlowdown of Interhelical Motions Induces a Glass Transition in RNAThe Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix FormationDevelopment of CHARMM polarizable force field for nucleic acid bases based on the classical Drude oscillator modelRefinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles.How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?Genetic algorithms coupled with quantum mechanics for refinement of force fields for RNA simulation: a case study of glycosidic torsions in the canonical ribonucleosides.Biophysical properties and thermal stability of oligonucleotides of RNA containing 7,8-dihydro-8-hydroxyadenosine.Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV proteaseMolecular mechanism of preQ1 riboswitch action: a molecular dynamics study.Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNA.Biophysical properties, thermal stability and functional impact of 8-oxo-7,8-dihydroguanine on oligonucleotides of RNA-a study of duplex, hairpins and the aptamer for preQ1 as models.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Effects of osmolytes on stable UUCG tetraloops and their preference for a CG closing base pair.Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation.Effects of osmolytes and macromolecular crowders on stable GAAA tetraloops and their preference for a CG closing base pair.Erythromycin leads to differential protein expression through differences in electrostatic and dispersion interactions with nascent proteins.Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot
P2860
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P2860
Free energy profile of RNA hairpins: a molecular dynamics simulation study.
description
2010 nî lūn-bûn
@nan
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
2010年论文
@zh
2010年论文
@zh-cn
name
Free energy profile of RNA hairpins: a molecular dynamics simulation study.
@en
type
label
Free energy profile of RNA hairpins: a molecular dynamics simulation study.
@en
prefLabel
Free energy profile of RNA hairpins: a molecular dynamics simulation study.
@en
P2860
P1433
P1476
Free energy profile of RNA hairpins: a molecular dynamics simulation study.
@en
P2093
Nan-Jie Deng
Piotr Cieplak
P2860
P304
P356
10.1016/J.BPJ.2009.10.040
P407
P577
2010-02-01T00:00:00Z