Molecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.
about
Quadruplex DNA: sequence, topology and structureLoss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motifIdentification of mixed di-cation forms of G-quadruplex in solutionMolecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structuresA crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplexConformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale.Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations.Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosomeCations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymeStructural dynamics of human telomeric G-quadruplex loops studied by molecular dynamics simulations.Molecular dynamics and principal components of potassium binding with human telomeric intra-molecular G-quadruplex.The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysisInteractions of a platinum-modified perylene derivative with the human telomeric G-quadruplex.Molecular dynamics simulations of RNA: an in silico single molecule approach.Extended molecular dynamics of a c-kit promoter quadruplex.Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA and Z-DNA.Towards a molecular dynamics consensus view of B-DNA flexibilityFirst International Meeting on Quadruplex DNA.Stability and kinetics of G-quadruplex structuresMolecular dynamics simulations and their application to four-stranded DNA.Theoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM.Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex.Atomistic-level portrayal of drug-DNA Interplay: a history of courtships and meetings revealed by molecular simulations.B-DNA characteristics are preserved in double stranded d(A)3·d(T)3 and d(G)3·d(C)3 mini-helixes: conclusions from DFT/M06-2X study.Molecular modeling of nucleic Acid structure: setup and analysis.Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process.Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis.Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitchRefinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles.Molecular dynamics and principal components analysis of human telomeric quadruplex multimers.Tuning supramolecular G-quadruplexes with mono- and divalent cations.An investigation of G-quadruplex structural polymorphism in the human telomere using a combined approach of hydrodynamic bead modeling and molecular dynamics simulation.Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe inStructural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations.Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field ParametersPredictive modelling of topology and loop variations in dimeric DNA quadruplex structures.Resolving the Ligand-Binding Specificity in c-MYC G-Quadruplex DNA: Absolute Binding Free Energy Calculations and SPR Experiment.Protonation of guanine quartets and quartet stacks: insights from DFT studies.
P2860
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P2860
Molecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.
description
2004 nî lūn-bûn
@nan
2004 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Molecular dynamics simulations ...... s and force field limitations.
@ast
Molecular dynamics simulations ...... s and force field limitations.
@en
Molecular dynamics simulations ...... s and force field limitations.
@nl
type
label
Molecular dynamics simulations ...... s and force field limitations.
@ast
Molecular dynamics simulations ...... s and force field limitations.
@en
Molecular dynamics simulations ...... s and force field limitations.
@nl
prefLabel
Molecular dynamics simulations ...... s and force field limitations.
@ast
Molecular dynamics simulations ...... s and force field limitations.
@en
Molecular dynamics simulations ...... s and force field limitations.
@nl
P2093
P2860
P50
P1433
P1476
Molecular dynamics simulations ...... s and force field limitations.
@en
P2093
Eva Fadrná
Nad'a Spacková
Richard Stefl
P2860
P304
P356
10.1529/BIOPHYSJ.103.034751
P407
P577
2004-07-01T00:00:00Z