Optimal clustering for detecting near-native conformations in protein docking.
about
Sampling and scoring: a marriage made in heavenProtein docking by the underestimation of free energy funnels in the space of encounter complexesComparative molecular docking analysis of cytoplasmic dynein light chain DYNLL1 with pilin to explore the molecular mechanism of pathogenesis caused by Pseudomonas aeruginosa PAOThe impact of side-chain packing on protein docking refinementClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.The size of the intermolecular energy funnel in protein-protein interactions.FRODOCK: a new approach for fast rotational protein-protein docking.Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.Insights into the architecture of the eIF2Bα/β/δ regulatory subcomplexProtein docking prediction using predicted protein-protein interface.Docking server for the identification of heparin binding sites on proteins.Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19SUMOylation of nuclear actinEvaluation of the coarse-grained OPEP force field for protein-protein docking.Application of asymmetric statistical potentials to antibody-protein dockingA flexible-protein molecular docking study of the binding of ruthenium complex compounds to PIM1, GSK-3β, and CDK2/Cyclin A protein kinases.Focused grid-based resampling for protein docking and mapping.Current state of theoretical and experimental studies of the voltage-dependent anion channel (VDAC)DARS (Decoys As the Reference State) potentials for protein-protein docking.Convergence and combination of methods in protein-protein docking.How good is automated protein docking?On the binding affinity of macromolecular interactions: daring to ask why proteins interact.The ClusPro web server for protein-protein docking.New additions to the ClusPro server motivated by CAPRI.Microscopic Modes and Free Energies for Topoisomerase I-DNA Covalent Complex Binding with Non-campothecin Inhibitors by Molecular Docking and Dynamics Simulations.Application of binding free energy calculations to prediction of binding modes and affinities of MDM2 and MDMX inhibitors.Wrapping mimicking in drug-like small molecules disruptive of protein-protein interfaces.Integrative Approach for Computationally Inferring Interactions between the Alpha and Beta Subunits of the Calcium-Activated Potassium Channel (BK): a Docking StudyInterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information.A computational model predicts that Gβγ acts at a cleft between channel subunits to activate GIRK1 channels.Detection of peptide-binding sites on protein surfaces: the first step toward the modeling and targeting of peptide-mediated interactions.Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.A computational design approach for virtual screening of peptide interactions across K(+) channel families.A Message Passing Approach to Side Chain Positioning with Applications in Protein Docking Refinement.Structural insight into the binding complex: β-arrestin/CCR5 complex.Chikungunya virus nsP1 interacts directly with nsP2 and modulates its ATPase activity.3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm.Structural quality of unrefined models in protein docking.Clustering biomolecular complexes by residue contacts similarity.Exploring c-Met kinase flexibility by sampling and clustering its conformational space.
P2860
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P2860
Optimal clustering for detecting near-native conformations in protein docking.
description
2005 nî lūn-bûn
@nan
2005 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Optimal clustering for detecting near-native conformations in protein docking.
@ast
Optimal clustering for detecting near-native conformations in protein docking.
@en
Optimal clustering for detecting near-native conformations in protein docking.
@nl
type
label
Optimal clustering for detecting near-native conformations in protein docking.
@ast
Optimal clustering for detecting near-native conformations in protein docking.
@en
Optimal clustering for detecting near-native conformations in protein docking.
@nl
prefLabel
Optimal clustering for detecting near-native conformations in protein docking.
@ast
Optimal clustering for detecting near-native conformations in protein docking.
@en
Optimal clustering for detecting near-native conformations in protein docking.
@nl
P2860
P1433
P1476
Optimal clustering for detecting near-native conformations in protein docking.
@en
P2093
Carlos J Camacho
Karl H Clodfelter
P2860
P304
P356
10.1529/BIOPHYSJ.104.058768
P407
P577
2005-05-20T00:00:00Z