YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
about
A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstrokeCoarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filtersComprehensive Molecular Structure of the Eukaryotic RibosomeInsertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictionsCryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factorRNA and protein 3D structure modeling: similarities and differences.Visualization of dynamins.Predicting loop-helix tertiary structural contacts in RNA pseudoknots.On the significance of an RNA tertiary structure prediction.Advances in RNA structure analysis by chemical probing.Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.Modeling nucleic acids.Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4.ModeRNA: a tool for comparative modeling of RNA 3D structureStructure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signalA Method to Predict the 3D Structure of an RNA ScaffoldAutomated RNA tertiary structure prediction from secondary structure and low-resolution restraints.Predicting helical coaxial stacking in RNA multibranch loopsPredicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion SolutionsEffects of pulling forces, osmotic pressure, condensing agents and viscosity on the thermodynamics and kinetics of DNA ejection from bacteriophages to bacterial cells: a computational studyCoarse-graining RNA nanostructures for molecular dynamics simulations.YUP.SCX: coaxing atomic models into medium resolution electron density maps.Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.Physics-based RNA structure prediction.Progress and Current Challenges in Modeling Large RNAs.Coarse-grained model for simulation of RNA three-dimensional structures.A domain-based model for predicting large and complex pseudoknotted structures.The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape.Physics-based de novo prediction of RNA 3D structures.Statistical mechanical modeling of RNA folding: from free energy landscape to tertiary structural prediction.Coarse-grained ions without charges: reproducing the solvation structure of NaCl in water using short-ranged potentials.An implicit divalent counterion force field for RNA molecular dynamics.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.Predicting RNA Structure with Vfold.A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs.Theory of wavelet-based coarse-graining hierarchies for molecular dynamics.
P2860
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P2860
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
description
2006 nî lūn-bûn
@nan
2006 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի մարտին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@ast
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@en
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@nl
type
label
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@ast
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@en
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@nl
prefLabel
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@ast
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@en
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@nl
P2093
P2860
P356
P1476
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models.
@en
P2093
Anton S Petrov
Robert K Z Tan
Stephen C Harvey
P2860
P304
P356
10.1021/CT050323R
P577
2006-03-18T00:00:00Z