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PyClone: statistical inference of clonal population structure in cancer.

PyClone: statistical inference of clonal population structure in cancer.

http://www.wikidata.org/entity/Q34410309

about

Inferring clonal composition from multiple sections of a breast cancer Sequencing pools of individuals — mining genome-wide polymorphism data without big funding Computational Cancer Biology: An Evolutionary Perspective Rethinking ovarian cancer II: reducing mortality from high-grade serous ovarian cancer Cancer classification in the genomic era: five contemporary problems The path to routine use of genomic biomarkers in the cancer clinic Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine Cancer evolution: mathematical models and computational inference SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution Patient-derived tumour xenografts for breast cancer drug discovery Elucidating Genomic Characteristics of Lung Cancer Progression from In Situ to Invasive Adenocarcinoma Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples Clonal Evolutionary Analysis during HER2 Blockade in HER2-Positive Inflammatory Breast Cancer: A Phase II Open-Label Clinical Trial of Afatinib +/- Vinorelbine A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization.A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data.TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data.Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data.Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.Predicting tumor purity from methylation microarray data.A simplicial complex-based approach to unmixing tumor progression data.Medoidshift clustering applied to genomic bulk tumor data.densityCut: an efficient and versatile topological approach for automatic clustering of biological data Measuring intratumor heterogeneity by network entropy using RNA-seq data.ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data.OncoNEM: inferring tumor evolution from single-cell sequencing data Whole-genome sequencing of bladder cancers reveals somatic CDKN1A mutations and clinicopathological associations with mutation burden.High-definition reconstruction of clonal composition in cancer Clinical Genomics: Challenges and Opportunities Genomic landscape and evolution of metastatic chromophobe renal cell carcinoma.Phylogenetic analysis of metastatic progression in breast cancer using somatic mutations and copy number aberrations Integrative analysis of genomic alterations in triple-negative breast cancer in association with homologous recombination deficiency.Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.Towards accurate characterization of clonal heterogeneity based on structural variation A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data.Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes.

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P2860

PyClone: statistical inference of clonal population structure in cancer.

http://www.wikidata.org/entity/Q34410309

description

2014 nî lūn-bûn

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2014 թուականի Մարտին հրատարակուած գիտական յօդուած

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2014 թվականի մարտին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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type

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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PyClone: statistical inference of clonal population structure in cancer.

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Adrian Wan

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Alexandre Bouchard-Côté

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Andrew Roth

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Emma Laks

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Jaswinder Khattra

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Justina Biele

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Samuel Aparicio

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Sohrab P Shah

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P2860

Targeted capture and massively parallel sequencing of 12 human exomes

A map of human genome variation from population-scale sequencing

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

The clonal evolution of tumor cell populations

Fast and accurate long-read alignment with Burrows-Wheeler transform

Clonal evolution in cancer

The life history of 21 breast cancers

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

Analysis of circulating tumor DNA to monitor metastatic breast cancer

Primer3--new capabilities and interfaces

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