CMfinder--a covariance model based RNA motif finding algorithm.
about
Identification of hammerhead ribozymes in all domains of life reveals novel structural variationsComparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomesIdentification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'RNAalifold: improved consensus structure prediction for RNA alignments.Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genesWidespread purifying selection on RNA structure in mammalsGlobal RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivoEvidence for widespread gene control function by the ydaO riboswitch candidateEvolution and function of the extended miR-2 microRNA familyRNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequencesGraphClust: alignment-free structural clustering of local RNA secondary structuresRfam: Wikipedia, clans and the "decimal" releaseThe amazing world of bacterial structured RNAsStructural basis for recognition of S-adenosylhomocysteine by riboswitchesWAR: Webserver for aligning structural RNAsR-Coffee: a method for multiple alignment of non-coding RNAUnifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsSemiautomated improvement of RNA alignmentsIdentification of a large noncoding RNA in extremophilic eubacteriaIdentification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipelineUsing RNA secondary structures to guide sequence motif finding towards single-stranded regionsRNA motif discovery: a computational overviewSolving nucleic acid structures by molecular replacement: examples from group II intron studiesHigh-throughput characterization of protein-RNA interactionsComputational analysis of noncoding RNAsRNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structureA fast structural multiple alignment method for long RNA sequencesFrom consensus structure prediction to RNA gene findingNew classes of self-cleaving ribozymes revealed by comparative genomics analysisThe mechanism for RNA recognition by ANTAR regulators of gene expressionReconstruction of ancestral RNA sequences under multiple structural constraintsDiscovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary StructuresAnnotating RNA motifs in sequences and alignmentsDiscovery and validation of novel and distinct RNA regulators for ribosomal protein S15 in diverse bacterial phylaGenome-wide transcriptome analysis shows extensive alternative RNA splicing in the zoonotic parasite Schistosoma japonicumStructured RNAs and synteny regions in the pig genomeEvolution of the miR199-214 cluster and vertebrate skeletal developmentMicroRNA discovery by similarity search to a database of RNA-seq profilesIncorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure predictionStructure-based whole-genome realignment reveals many novel noncoding RNAs
P2860
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P2860
CMfinder--a covariance model based RNA motif finding algorithm.
description
2005 nî lūn-bûn
@nan
2005 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
CMfinder--a covariance model based RNA motif finding algorithm.
@ast
CMfinder--a covariance model based RNA motif finding algorithm.
@en
CMfinder--a covariance model based RNA motif finding algorithm.
@nl
type
label
CMfinder--a covariance model based RNA motif finding algorithm.
@ast
CMfinder--a covariance model based RNA motif finding algorithm.
@en
CMfinder--a covariance model based RNA motif finding algorithm.
@nl
prefLabel
CMfinder--a covariance model based RNA motif finding algorithm.
@ast
CMfinder--a covariance model based RNA motif finding algorithm.
@en
CMfinder--a covariance model based RNA motif finding algorithm.
@nl
P2093
P356
P1433
P1476
CMfinder--a covariance model based RNA motif finding algorithm.
@en
P2093
Walter L Ruzzo
Zasha Weinberg
Zizhen Yao
P304
P356
10.1093/BIOINFORMATICS/BTK008
P407
P577
2005-12-15T00:00:00Z