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Analysis and design of RNA sequencing experiments for identifying isoform regulation

Analysis and design of RNA sequencing experiments for identifying isoform regulation

http://www.wikidata.org/entity/Q34565989

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Current challenges in the bioinformatics of single cell genomics.Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks RNA-Seq methods for transcriptome analysis RNA-binding proteins, neural development and the addictions Genetic Susceptibility to Rhodococcus equi Dynamic integration of splicing within gene regulatory pathways Mechanisms and consequences of alternative polyadenylation Genetic variation of pre-mRNA alternative splicing in human populations Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases All's well that ends well: alternative polyadenylation and its implications for stem cell biology RNA-binding proteins in neurodegeneration: Seq and you shall receive Advanced Applications of RNA Sequencing and Challenges Computational analysis of noncoding RNAs Introduction to sequencing the brain transcriptome Adult mouse cortical cell taxonomy revealed by single cell transcriptomics Oxidative Stress Triggers Body-Wide Skipping of Multiple Exons of the Spinal Muscular Atrophy Gene Vials: Visualizing Alternative Splicing of Genes.Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens A survey of best practices for RNA-seq data analysis HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing Cytoplasmic Drosha activity generated by alternative splicing In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity Misregulation of Alternative Splicing in a Mouse Model of Rett Syndrome POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins In the spotlight: Bioinformatics RNA Sequencing and Analysis Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways RNA-seq analysis of single bovine blastocysts An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq Endogenous DUX4 expression in FSHD myotubes is sufficient to cause cell death and disrupts RNA splicing and cell migration pathways RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome lincRNAs act in the circuitry controlling pluripotency and differentiation Differential analysis of gene regulation at transcript resolution with RNA-seq

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

http://www.wikidata.org/entity/Q34565989

description

2010 nî lūn-bûn

@nan

2010 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի նոյեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

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2010年論文

@zh-hk

2010年論文

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2010年論文

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2010年论文

@wuu

name

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@ast

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@en

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@nl

type

label

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@ast

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@en

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@nl

prefLabel

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@ast

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@en

Analysis and design of RNA sequencing experiments for identifying isoform regulation

@nl

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

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Christopher B Burge

http://www.w3.org/2001/XMLSchema#string

Eric T Wang

http://www.w3.org/2001/XMLSchema#string

Yarden Katz

http://www.w3.org/2001/XMLSchema#string

P2860

Getting started in probabilistic graphical models

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

The hnRNPs F and H2 bind to similar sequences to influence gene expression

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Annotating genomes with massive-scale RNA sequencing

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

TopHat: discovering splice junctions with RNA-Seq

PolyA_DB: a database for mammalian mRNA polyadenylation

Global and unbiased detection of splice junctions from RNA-seq data

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1009-1015

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scholarly article

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10.1038/NMETH.1528

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12

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7

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Edoardo M Airoldi

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2010-11-07T00:00:00Z

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47701341

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1047715940

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21057496

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3037023

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