AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision
about
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectivesDELLY: structural variant discovery by integrated paired-end and split-read analysisStructural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectivesCNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencingAnalysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell divisionCoval: improving alignment quality and variant calling accuracy for next-generation sequencing data.TE-Locate: A Tool to Locate and Group Transposable Element Occurrences Using Paired-End Next-Generation Sequencing Data.G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.Sprites: detection of deletions from sequencing data by re-aligning split reads.An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities.PolyTB: a genomic variation map for Mycobacterium tuberculosisIdentification of genomic indels and structural variations using split readsGenome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.Novel variation and de novo mutation rates in population-wide de novo assembled Danish triosDetection of gene expression changes at chromosomal rearrangement breakpoints in evolutionAn improved approach for accurate and efficient calling of structural variations with low-coverage sequence data.Characterization of structural variants with single molecule and hybrid sequencing approaches.Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assembliesDiscovery of recurrent structural variants in nasopharyngeal carcinoma.Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries.Vindel: a simple pipeline for checking indel redundancyMetaSV: an accurate and integrative structural-variant caller for next generation sequencing.Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.DNA sequencing: clinical applications of new DNA sequencing technologies.CNV discovery for milk composition traits in dairy cattle using whole genome resequencing.Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scaleStructural Variant Detection by Large-scale Sequencing Reveals New Evolutionary Evidence on Breed Divergence between Chinese and European Pigs.Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells.Current analysis platforms and methods for detecting copy number variationLocal sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes.Characterising chromosome rearrangements: recent technical advances in molecular cytogeneticsPathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.Systems genetics in "-omics" era: current and future development.Child development and structural variation in the human genome.Making the difference: integrating structural variation detection tools.Seeksv: an accurate tool for somatic structural variation and virus integration detection.Accurate indel prediction using paired-end short reads.Elevated variant density around SV breakpoints in germline lineage lends support to error-prone replication hypothesis.A deterministic analysis of genome integrity during neoplastic growth in Drosophila.
P2860
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P2860
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision
description
2011 nî lūn-bûn
@nan
2011 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
AGE: defining breakpoints of g ...... l alignments with gap excision
@ast
AGE: defining breakpoints of g ...... l alignments with gap excision
@en
AGE: defining breakpoints of g ...... l alignments with gap excision
@nl
type
label
AGE: defining breakpoints of g ...... l alignments with gap excision
@ast
AGE: defining breakpoints of g ...... l alignments with gap excision
@en
AGE: defining breakpoints of g ...... l alignments with gap excision
@nl
prefLabel
AGE: defining breakpoints of g ...... l alignments with gap excision
@ast
AGE: defining breakpoints of g ...... l alignments with gap excision
@en
AGE: defining breakpoints of g ...... l alignments with gap excision
@nl
P2860
P356
P1433
P1476
AGE: defining breakpoints of g ...... l alignments with gap excision
@en
P2860
P304
P356
10.1093/BIOINFORMATICS/BTQ713
P407
P577
2011-01-13T00:00:00Z