Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. - Wikidata - wikimedia - TriplyDB

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

http://www.wikidata.org/entity/Q34612025

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Structure based hypothesis of a mitochondrial ribosome rescue mechanism NDUFB7 and NDUFA8 are located at the intermembrane surface of complex I The UBIAD1 prenyltransferase links menaquinone-4 [corrected] synthesis to cholesterol metabolic enzymes IQ-motif selectivity in human IQGAP2 and IQGAP3: binding of calmodulin and myosin essential light chain The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions GPCRDB: information system for G protein-coupled receptors A new model for allosteric regulation of phenylalanine hydroxylase: implications for disease and therapeutics Why boys will be boys: two pathways of fetal testicular androgen biosynthesis are needed for male sexual differentiation NucleaRDB: information system for nuclear receptors Glutamate transporter homolog-based model predicts that anion-π interaction is the mechanism for the voltage-dependent response of prestin.Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin Integrating GPCR-specific information with full text articles Molecular Mechanism of Selectivity among G Protein-Coupled Receptor Kinase 2 Inhibitors Crystal Structures Explain Functional Differences in the Two Actin Depolymerization Factors of the Malaria Parasite Eurocin, a New Fungal Defensin: STRUCTURE, LIPID BINDING, AND ITS MODE OF ACTION Crystal Structure and Computational Modeling of the Fab Fragment from a Protective Anti-Ricin Monoclonal Antibody The insect defensin lucifensin from Lucilia sericata Crystal Structure of the Gamma-2 Herpesvirus LANA DNA Binding Domain Identifies Charged Surface Residues Which Impact Viral Latency Insights into the oligomerization of CRMPs: crystal structure of human collapsin response mediator protein 5 Molecular characterization of novel pyridoxal-5′-phosphate-dependent enzymes from the human microbiome Structural and Spectroscopic Insights into BolA-Glutaredoxin Complexes Crystal Structure of the Extended-Spectrum -Lactamase PER-2 and Insights into the Role of Specific Residues in the Interaction with -Lactams and -Lactamase Inhibitors Retraction: Site‐specific recombination of nitrogen‐fixation genes in cyanobacteria by XisF–XisH–XisI complex: Structures and models, William C. Hwang, James W. Golden, Jaime Pascual, Dong Xu, Anton Cheltsov, Adam Godzik Evolution of the key alkaloid enzyme putrescine N-methyltransferase from spermidine synthase Isolated and Syndromic Retinal Dystrophy Caused by Biallelic Mutations in RCBTB1, a Gene Implicated in Ubiquitination Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning Homozygous SLC6A17 mutations cause autosomal-recessive intellectual disability with progressive tremor, speech impairment, and behavioral problems A Protein Data Bank survey reveals shortening of intermolecular hydrogen bonds in ligand-protein complexes when a halogenated ligand is an H-bond donor Molecular docking simulations provide insights in the substrate binding sites and possible substrates of the ABCC6 transporter In depth analysis on the binding sites of adamantane derivatives in HCV (hepatitis C virus) p7 channel based on the NMR structure Biochemical Characterization of the Split Class II Ribonucleotide Reductase from Pseudomonas aeruginosa Decoding the Interactions Regulating the Active State Mechanics of Eukaryotic Protein Kinases The mitochondrial calcium uniporter is a multimer that can include a dominant-negative pore-forming subunit Drug design for ever, from hype to hope NR5A1 is a novel disease gene for 46,XX testicular and ovotesticular disorders of sex development Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome.The Vps27/Hrs/STAM (VHS) Domain of the Signal-transducing Adaptor Molecule (STAM) Directs Associated Molecule with the SH3 Domain of STAM (AMSH) Specificity to Longer Ubiquitin Chains and Dictates the Position of Cleavage.Inhibition of CIN85-mediated invasion by a novel SH3 domain binding motif in the lysyl oxidase propeptide.

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Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

http://www.wikidata.org/entity/Q34612025

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2009 nî lūn-bûn

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2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2009 թվականի հունվարին հրատարակված գիտական հոդված

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2009年の論文

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Elmar Krieger

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James Thompson

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Jinwoo Lee

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Jooyoung Lee

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Keehyoung Joo

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Kevin Karplus

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Mike Tyka

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Srivatsan Raman

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P2860

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.

All-atom empirical potential for molecular modeling and dynamics studies of proteins

Errors in protein structures

Comparative protein modelling by satisfaction of spatial restraints

Stochastic pairwise alignments

Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

A graph-theory algorithm for rapid protein side-chain prediction

Global optimization of clusters, crystals, and biomolecules.

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114-122

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10.1002/PROT.22570

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77 Suppl 9

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2922016

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