Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop.
about
Understanding nucleic acid-ion interactionsBiomolecular electrostatics and solvation: a computational perspectiveMolecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structuresRole of helical constraints of the EBS1-IBS1 duplex of a group II intron on demarcation of the 5' splice siteMagnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch.Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EMTheory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.Predicting ion binding properties for RNA tertiary structures.Salt contribution to RNA tertiary structure folding stabilityIonic strength-dependent persistence lengths of single-stranded RNA and DNA.Ion-mediated RNA structural collapse: effect of spatial confinement.Multiscale methods for computational RNA enzymology.Competitive interaction of monovalent cations with DNA from 3D-RISM.Ion counting from explicit-solvent simulations and 3D-RISM.Sensitivities to parameterization in the size-modified Poisson-Boltzmann equation.Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water.Advances in RNA molecular dynamics: a simulator's guide to RNA force fields.Predicting Ion Effects in an RNA Conformational Equilibrium.Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?Monte Carlo Tightly Bound Ion Model: Predicting Ion-Binding Properties of RNA with Ion Correlations and FluctuationsQuantitative analysis of the ion-dependent folding stability of DNA triplexes.Predicting ion-nucleic acid interactions by energy landscape-guided sampling.Interactions of cations with RNA loop-loop complexes.Salt contribution to the flexibility of single-stranded nucleic acid offinite length.A New Method to Predict Ion Effects in RNA Folding.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Entropic effects in the electric double layer of model colloids with size-asymmetric monovalent ions.Electrostatics Explains the Position-Dependent Effect of G⋅U Wobble Base Pairs on the Affinity of RNA Kissing Complexes.Molecular Modeling Applied to Nucleic Acid-Based Molecule Development
P2860
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P2860
Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop.
description
2009 nî lūn-bûn
@nan
2009 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
Molecular simulation studies o ...... s in a model RNA kissing loop.
@ast
Molecular simulation studies o ...... s in a model RNA kissing loop.
@en
Molecular simulation studies o ...... s in a model RNA kissing loop.
@nl
type
label
Molecular simulation studies o ...... s in a model RNA kissing loop.
@ast
Molecular simulation studies o ...... s in a model RNA kissing loop.
@en
Molecular simulation studies o ...... s in a model RNA kissing loop.
@nl
prefLabel
Molecular simulation studies o ...... s in a model RNA kissing loop.
@ast
Molecular simulation studies o ...... s in a model RNA kissing loop.
@en
Molecular simulation studies o ...... s in a model RNA kissing loop.
@nl
P2860
P1476
Molecular simulation studies o ...... ns in a model RNA kissing loop
@en
P2093
David E Draper
Rohit V Pappu
P2860
P304
P356
10.1016/J.JMB.2009.05.071
P407
P50
P577
2009-05-29T00:00:00Z