Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing. - Wikidata - wikimedia - TriplyDB

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

http://www.wikidata.org/entity/Q35008732

about

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators The prospect of molecular therapy for Angelman syndrome and other monogenic neurologic disorders Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes Protein-DNA binding in high-resolution Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection Identification of Preferred DNA-Binding Sites for the Thermus thermophilus Transcriptional Regulator SbtR by the Combinatorial Approach REPSA A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells.A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities RNA Bind-n-Seq: quantitative assessment of the sequence and structural binding specificity of RNA binding proteins.Absence of a simple code: how transcription factors read the genome Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing.Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding.Highly active zinc-finger nucleases by extended modular assembly Experimental strategies for studying transcription factor-DNA binding specificities.An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.The generation of zinc finger proteins by modular assembly.Spec-seq: determining protein-DNA-binding specificity by sequencing.Miz-1 activates gene expression via a novel consensus DNA binding motif Single-nucleotide mutation matrix: a new model for predicting the NF-κB DNA binding sites.Determining the specificities of TALENs, Cas9, and other genome-editing enzymes Advancing small-molecule-based chemical biology with next-generation sequencing technologies.Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions.Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits.Identification of Sequence Specificity of 5-Methylcytosine Oxidation by Tet1 Protein with High-Throughput Sequencing.SELEX Modifications and Bioanalytical Techniques for Aptamer-Target Binding Characterization.Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage The zinc fingers of YY1 bind single-stranded RNA with low sequence specificity.Atomistic modeling of protein-DNA interaction specificity: progress and applications.BEESEM: estimation of binding energy models using HT-SELEX data.Protein Delivery of an Artificial Transcription Factor Restores Widespread Ube3a Expression in an Angelman Syndrome Mouse Brain Quantitative analysis of TALE-DNA interactions suggests polarity effects.To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins.Evaluation of methods for modeling transcription factor sequence specificity.Mapping yeast transcriptional networks Combinatorial bZIP dimers display complex DNA-binding specificity landscapes.

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Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

http://www.wikidata.org/entity/Q35008732

description

2009 nî lūn-bûn

@nan

2009 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի դեկտեմբերին հրատարակված գիտական հոդված

@hy

2009年の論文

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2009年論文

@yue

2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

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2009年論文

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2009年论文

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name

Bind-n-Seq: high-throughput an ...... massively parallel sequencing.

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Bind-n-Seq: high-throughput an ...... massively parallel sequencing.

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type

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Bind-n-Seq: high-throughput an ...... massively parallel sequencing.

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Bind-n-Seq: high-throughput an ...... massively parallel sequencing.

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Nucleic Acids Research

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Bind-n-Seq: high-throughput an ...... massively parallel sequencing

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Artem Zykovich

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Ian Korf

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P2860

OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

DNA-binding specificity of NGFI-A and related zinc finger transcription factors

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

Ab initio prediction of transcription factor targets using structural knowledge.

Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions.

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

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10.1093/NAR/GKP802

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