PredUs: a web server for predicting protein interfaces using structural neighbors. - Wikidata - wikimedia - TriplyDB

PredUs: a web server for predicting protein interfaces using structural neighbors.

PredUs: a web server for predicting protein interfaces using structural neighbors.

http://www.wikidata.org/entity/Q35075567

about

Computational prediction of protein interfaces: A review of data driven methods Crystal structure of the ubiquitin-like domain of human TBK1 NMR structure and MD simulations of the AAA protease intermembrane space domain indicates peripheral membrane localization within the hexaoligomer RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions Progress and challenges in predicting protein interfaces Structure-based prediction of protein–protein interactions on a genome-wide scale Predicting protein-protein interface residues using local surface structural similarity EXIA2: web server of accurate and rapid protein catalytic residue prediction.Algorithmic approaches to protein-protein interaction site prediction.Toward a "structural BLAST": using structural relationships to infer function.PI(2)PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.Scoring docking conformations using predicted protein interfaces.IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins CombFunc: predicting protein function using heterogeneous data sources Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces.PAIRpred: partner-specific prediction of interacting residues from sequence and structure Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor.Histone H2A and H4 N-terminal tails are positioned by the MEP50 WD repeat protein for efficient methylation by the PRMT5 arginine methyltransferase A Computational Approach towards the Understanding of Plasmodium falciparum Multidrug Resistance Protein 1 Decomposing the space of protein quaternary structures with the interface fragment pair library.PredRSA: a gradient boosted regression trees approach for predicting protein solvent accessibility.PredPhos: an ensemble framework for structure-based prediction of phosphorylation sites Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the Human Cancer Protein Interaction Network.Solution NMR structure of CD1104B from pathogenic Clostridium difficile reveals a distinct α-helical architecture and provides first structural representative of protein domain family PF14203.Elucidating the druggable interface of protein-protein interactions using fragment docking and coevolutionary analysis.Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages.Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.Integrative computational modeling of protein interactions.Directly investigating the interaction between aptamers and thrombin by atomic force microscopy.Predicting protein interface residues using easily accessible on-line resources.Computational Approaches for Predicting Binding Partners, Interface Residues, and Binding Affinity of Protein-Protein Complexes.JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.A hybrid method for protein-protein interface prediction.A computational tool to predict the evolutionarily conserved protein-protein interaction hot-spot residues from the structure of the unbound protein.Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites.A structural perspective on the interactions of TRAF6 and Basigin during the onset of melanoma: A molecular dynamics simulation study.Exploring the potential of 3D Zernike descriptors and SVM for protein-protein interface prediction.Ofatumumab Monoclonal Antibody Affinity Maturation Through in silico Modeling.Identification and visualization of protein binding regions with the ArDock server.

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P2860

PredUs: a web server for predicting protein interfaces using structural neighbors.

http://www.wikidata.org/entity/Q35075567

description

2011 nî lūn-bûn

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2011 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի մայիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

PredUs: a web server for predicting protein interfaces using structural neighbors.

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PredUs: a web server for predicting protein interfaces using structural neighbors.

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PredUs: a web server for predicting protein interfaces using structural neighbors.

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PredUs: a web server for predicting protein interfaces using structural neighbors.

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PredUs: a web server for predicting protein interfaces using structural neighbors.

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PredUs: a web server for predicting protein interfaces using structural neighbors.

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P2093

Barry Honig

http://www.w3.org/2001/XMLSchema#string

Donald Petrey

http://www.w3.org/2001/XMLSchema#string

Jihong Guan

http://www.w3.org/2001/XMLSchema#string

Lei Deng

http://www.w3.org/2001/XMLSchema#string

Markus Fisher

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Qiangfeng Cliff Zhang

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P2860

Gene ontology: tool for the unification of biology

The Protein Data Bank

The Pfam protein families database

The atomic structure of protein-protein recognition sites

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

Structural relationships among proteins with different global topologies and their implications for function annotation strategies

Protein interface conservation across structure space

SCOP: a structural classification of proteins database.

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10.1093/NAR/GKR311

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Web Server issue

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39

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2011-05-23T00:00:00Z

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21609948

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3125747

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