Structural relationships among proteins with different global topologies and their implications for function annotation strategies - Wikidata - wikimedia - TriplyDB

Structural relationships among proteins with different global topologies and their implications for function annotation strategies

Structural relationships among proteins with different global topologies and their implications for function annotation strategies

http://www.wikidata.org/entity/Q30381353

about

Membrane topology and predicted RNA-binding function of the 'early responsive to dehydration (ERD4)' plant protein Solution NMR structure of photosystem II reaction center protein Psb28 fromSynechocystis sp. Strain PCC 6803 Structures of domains I and IV from YbbR are representative of a widely distributed protein family Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267 Progress and challenges in predicting protein interfaces The enzymatic and metabolic capabilities of early life Searching the protein structure database for ligand-binding site similarities using CPASS v.2 NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli.On the role of physics and evolution in dictating protein structure and function Algorithmic approaches to protein-protein interaction site prediction.High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics PUDGE: a flexible, interactive server for protein structure prediction Protein interface conservation across structure space Effect of using suboptimal alignments in template-based protein structure prediction.Protein domain assignment from the recurrence of locally similar structures.Resolving protein structure-function-binding site relationships from a binding site similarity network perspective.A new approach to assess and predict the functional roles of proteins across all known structures Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold.Using structure to explore the sequence alignment space of remote homologs.CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure Toward a "structural BLAST": using structural relationships to infer function.The evolution and functional repertoire of translation proteins following the origin of life.Prediction and experimental validation of enzyme substrate specificity in protein structures.Cholesterol selectively activates canonical Wnt signalling over non-canonical Wnt signalling.Molecular mechanisms involved in the side effects of fatty acid amide hydrolase inhibitors: a structural phenomics approach to proteome-wide cellular off-target deconvolution and disease association.Knowledge-based annotation of small molecule binding sites in proteins.OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536.The SHOCT domain: a widespread domain under-represented in model organisms Interplay of physics and evolution in the likely origin of protein biochemical function Structure-based systems biology for analyzing off-target binding Remote thioredoxin recognition using evolutionary conservation and structural dynamics.ASSIST: a fast versatile local structural comparison tool.Filling out the structural map of the NTF2-like superfamily.PredUs: a web server for predicting protein interfaces using structural neighbors.MarkUs: a server to navigate sequence-structure-function space Resilience of biochemical activity in protein domains in the face of structural divergence.Protein annotation from protein interaction networks and Gene Ontology.A new method to improve network topological similarity search: applied to fold recognition

P2860

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P2860

Structural relationships among proteins with different global topologies and their implications for function annotation strategies

http://www.wikidata.org/entity/Q30381353

description

2009 nî lūn-bûn

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2009 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Barry Honig

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Donald Petrey

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Markus Fischer

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P2860

SISYPHUS--structural alignments for proteins with non-trivial relationships

ProFunc: a server for predicting protein function from 3D structure.

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

SCOP database in 2004: refinements integrate structure and sequence family data

The CATH database: an extended protein family resource for structural and functional genomics

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

Inference of protein function from protein structure.

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

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41

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