Thirteen years of building constraint-based in silico models of Escherichia coli.
about
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)Extending knowledge of Escherichia coli metabolism by modeling and experimentGenome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation.Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiaeLarge-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeastIdentification of metabolic system parameters using global optimization methodsComputing the functional proteome: recent progress and future prospects for genome-scale modelsUsing Genome-scale Models to Predict Biological CapabilitiesFBA-SimVis: interactive visualization of constraint-based metabolic modelsGenome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnologyMetabolically engineered bacteria for producing hydrogen via fermentationPutative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome dataRegulatory on/off minimization of metabolic flux changes after genetic perturbationsA genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationReconstruction of biochemical networks in microorganismsThermodynamically feasible kinetic models of reaction networks.CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.Advances in network-based metabolic pathway analysis and gene expression data integration.Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data setsCombining Targeted Metabolomic Data with a Model of Glucose Metabolism: Toward Progress in Chondrocyte Mechanotransduction.Systematic assignment of thermodynamic constraints in metabolic network models.System estimation from metabolic time-series data.Genome-scale models of bacterial metabolism: reconstruction and applications.Analysis on relationship between extreme pathways and correlated reaction sets.Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.Characterization of proton production and consumption associated with microbial metabolism.Achieving optimal growth through product feedback inhibition in metabolismComplete enumeration of elementary flux modes through scalable demand-based subnetwork definition.Characterizing the metabolism of Dehalococcoides with a constraint-based model.Comparison on extreme pathways reveals nature of different biological processes.Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.Molecular-level tradeoffs and metabolic adaptation to simultaneous stressorsk-Cone analysis: determining all candidate values for kinetic parameters on a network scale.Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic modelsYeast dynamic metabolic flux measurement in nutrient-rich media by HPLC and accelerator mass spectrometry.Metabolic footprinting and systems biology: the medium is the message.Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.MC3: a steady-state model and constraint consistency checker for biochemical networks.Systems biology: the next frontier for bioinformatics.
P2860
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P2860
Thirteen years of building constraint-based in silico models of Escherichia coli.
description
2003 nî lūn-bûn
@nan
2003 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
name
Thirteen years of building constraint-based in silico models of Escherichia coli.
@ast
Thirteen years of building constraint-based in silico models of Escherichia coli.
@en
type
label
Thirteen years of building constraint-based in silico models of Escherichia coli.
@ast
Thirteen years of building constraint-based in silico models of Escherichia coli.
@en
prefLabel
Thirteen years of building constraint-based in silico models of Escherichia coli.
@ast
Thirteen years of building constraint-based in silico models of Escherichia coli.
@en
P2860
P1476
Thirteen years of building constraint-based in silico models of Escherichia coli.
@en
P2093
Jennifer L Reed
P2860
P304
P356
10.1128/JB.185.9.2692-2699.2003
P407
P577
2003-05-01T00:00:00Z