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Thermodynamic calculations and statistical correlations for oligo-probes design.

Thermodynamic calculations and statistical correlations for oligo-probes design.

http://www.wikidata.org/entity/Q35186100

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Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome The influence of locked nucleic acid residues on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes Comprehensive viral oligonucleotide probe design using conserved protein regions Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis.Mismatch and G-stack modulated probe signals on SNP microarrays.Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction.Computational models with thermodynamic and composition features improve siRNA design.Hybridization thermodynamics of NimbleGen microarrays.G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration.Antisense DNA parameters derived from next-nearest-neighbor analysis of experimental data.Nonparametric methods for the analysis of single-color pathogen microarrays.The impact of quantitative optimization of hybridization conditions on gene expression analysis.Evaluating oligonucleotide properties for DNA microarray probe design.Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks Shielding effect of monovalent and divalent cations on solid-phase DNA hybridization: surface plasmon resonance biosensor study Intra-platform comparison of 25-mer and 60-mer oligonucleotide Nimblegen DNA microarrays Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted.A revised design for microarray experiments to account for experimental noise and uncertainty of probe response Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation.Optimization of signal-to-noise ratio for efficient microarray probe design.Optimized models for design of efficient miR30-based shRNAs.The signature of maternal rearing in the methylome in rhesus macaque prefrontal cortex and T cells In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.Rational design of DNA sequences for nanotechnology, microarrays and molecular computers using Eulerian graphs.Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.Analysis of crucial factors resulting in microarray hybridization failure.Specific and nonspecific hybridization of oligonucleotide probes on microarrays.A model of base-call resolution on broad-spectrum pathogen detection resequencing DNA microarrays Thermodynamic criteria for high hit rate antisense oligonucleotide design.Native characterization of nucleic acid motif thermodynamics via non-covalent catalysis.Nearest neighbor parameters for Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA oligonucleotides.Protein expression dynamics during postnatal mouse brain development.A new platform for a convenient genotyping system.Prediction of antisense oligonucleotide efficacy using aggregate motifs.Kinetic effects on signal normalization in oligonucleotide microchips with labeled immobilized probes.A generalized probe selection method for DNA chips.Expression Profiling of Antibiotic-Resistant Bacteria Obtained by Laboratory Evolution.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

http://www.wikidata.org/entity/Q35186100

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2003 nî lūn-bûn

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2003 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2003 թվականի հուլիսին հրատարակված գիտական հոդված

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2003年の論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年论文

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Thermodynamic calculations and statistical correlations for oligo-probes design.

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Nucleic Acids Research

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Thermodynamic calculations and statistical correlations for oligo-probes design

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A D Tsodikov

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O V Matveeva

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R F Gesteland

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V A Nemtsov

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P2860

Predicting oligonucleotide affinity to nucleic acid targets.

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

Molecular interactions on microarrays

Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA

DNA microarrays. History and overview.

Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts

Antisense oligonucleotides selected by hybridisation to scanning arrays are effective reagents in vivo.

Prediction of antisense oligonucleotide binding affinity to a structured RNA target.

Thermodynamics of internal C.T mismatches in DNA.

Studies of oligonucleotide interactions by hybridisation to arrays: the influence of dangling ends on duplex yield.

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