Discriminative prediction of mammalian enhancers from DNA sequence.
about
What does our genome encode?Linking genome to epigenomeGroup normalization for genomic data.kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data setsMachine learning and genome annotation: a match meant to be?WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.Short DNA sequence patterns accurately identify broadly active human enhancersEstimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood countsTranscriptional enhancers in protein-coding exons of vertebrate developmental genes.High-throughput functional testing of ENCODE segmentation predictions.Topology of mammalian developmental enhancers and their regulatory landscapes.Applications of alignment-free methods in epigenomicsEvidence for deep regulatory similarities in early developmental programs across highly diverged insectsA novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcriptionDivergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesisA compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design.Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model.Identifying transcriptional cis-regulatory modules in animal genomes.Computational identification of active enhancers in model organisms.Integrating diverse datasets improves developmental enhancer predictionEnhanced regulatory sequence prediction using gapped k-mer features.Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels.SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element MapsPrediction of promoters and enhancers using multiple DNA methylation-associated features.Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences.Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest ModelsA method to predict the impact of regulatory variants from DNA sequence.Computational prediction and experimental validation of novel Hedgehog-responsive enhancers linked to genes of the Hedgehog pathwaygkmSVM: an R package for gapped-kmer SVMSystematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell TraitsGenomic approaches for understanding the genetics of complex disease.A synergistic DNA logic predicts genome-wide chromatin accessibility.Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence PatternsAccurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.Pse-Analysis: a python package for DNA/RNA and protein/ peptide sequence analysis based on pseudo components and kernel methods.Imputation for transcription factor binding predictions based on deep learningDiscriminating between HuR and TTP binding sites using the k-spectrum kernel method.A sequence-based method to predict the impact of regulatory variants using random forest.
P2860
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P2860
Discriminative prediction of mammalian enhancers from DNA sequence.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
Discriminative prediction of mammalian enhancers from DNA sequence.
@ast
Discriminative prediction of mammalian enhancers from DNA sequence.
@en
type
label
Discriminative prediction of mammalian enhancers from DNA sequence.
@ast
Discriminative prediction of mammalian enhancers from DNA sequence.
@en
prefLabel
Discriminative prediction of mammalian enhancers from DNA sequence.
@ast
Discriminative prediction of mammalian enhancers from DNA sequence.
@en
P2860
P356
P1433
P1476
Discriminative prediction of mammalian enhancers from DNA sequence
@en
P2093
Michael A Beer
Rachel Karchin
P2860
P304
P356
10.1101/GR.121905.111
P50
P577
2011-08-29T00:00:00Z