UniPROBE: an online database of protein binding microarray data on protein-DNA interactions - Wikidata - wikimedia - TriplyDB

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

http://www.wikidata.org/entity/Q24655466

about

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research DNA methylation data analysis and its application to cancer research Identification of DVA interneuron regulatory sequences in Caenorhabditis elegans Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1.Direct regulation of diurnal Drd3 expression and cocaine reward by NPAS2.High-resolution DNA-binding specificity analysis of yeast transcription factors.Compound mouse mutants of bZIP transcription factors Mafg and Mafk reveal a regulatory network of non-crystallin genes associated with cataract An expansive human regulatory lexicon encoded in transcription factor footprints Discovery and characterization of human exonic transcriptional regulatory elements DNA methylation restricts lineage-specific functions of transcription factor Gata4 during embryonic stem cell differentiation SNP microarray analyses reveal copy number alterations and progressive genome reorganization during tumor development in SVT/t driven mice breast cancer Human developmental enhancers conserved between deuterostomes and protostomes Annotation of functional variation in personal genomes using RegulomeDB Systematic localization of common disease-associated variation in regulatory DNA JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles Diversity and complexity in DNA recognition by transcription factors Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite DiffLogo: a comparative visualization of sequence motifs A general approach for discriminative de novo motif discovery from high-throughput data DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning The appeasement of Doug: a synthetic approach to enhancer biology.Functional and phylogenetic characterization of proteins detected in various nematode intestinal compartments.Identification of molecular compartments and genetic circuitry in the developing mammalian kidney TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data.kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets Automated discovery of tissue-targeting enhancers and transcription factors from binding motif and gene function data.A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.Motif-based analysis of large nucleotide data sets using MEME-ChIP.UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions A review of ensemble methods for de novo motif discovery in ChIP-Seq data.Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.

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UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

http://www.wikidata.org/entity/Q24655466

description

2009 nî lūn-bûn

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2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2009 թվականի հունվարին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Nucleic Acids Research

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UniPROBE: an online database o ...... ta on protein-DNA interactions

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Daniel E Newburger

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Martha L Bulyk

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Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

Gene Ontology annotations at SGD: new data sources and annotation methods

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

enoLOGOS: a versatile web tool for energy normalized sequence logos

Quantifying similarity between motifs

WebLogo: A Sequence Logo Generator

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.

Specific DNA-binding by apicomplexan AP2 transcription factors

Genome-wide location and function of DNA binding proteins

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D77-82

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scholarly article

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1971260

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10.1093/NAR/GKN660

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Database issue

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37

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2009-01-01T00:00:00Z

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23307014

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18842628

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2686578

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