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General transcription factor specified global gene regulation in archaea

General transcription factor specified global gene regulation in archaea

http://www.wikidata.org/entity/Q35721656

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The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea DNA damage induces nucleoid compaction via the Mre11-Rad50 complex in the archaeon Haloferax volcanii Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux How do haloarchaea synthesize aromatic amino acids?Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.Integration and visualization of systems biology data in context of the genome Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways.Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin Coordination of frontline defense mechanisms under severe oxidative stress.The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.Evolution of context dependent regulation by expansion of feast/famine regulatory proteins Structure and function of archaeal RNA polymerases.Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon.A system-level model for the microbial regulatory genome Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea Niche adaptation by expansion and reprogramming of general transcription factors.Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks Dissection of the regulatory mechanism of a heat-shock responsive promoter in Haloarchaea: a new paradigm for general transcription factor directed archaeal gene regulation.Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability.Prevalence of transcription promoters within archaeal operons and coding sequences.The Sulfolobus initiator element is an important contributor to promoter strength OMICS in ecology: systems level analyses of Halobacterium salinarum reveal large-scale temperature-mediated changes and a requirement of CctA for thermotolerance.Analysis of the transcriptional regulator GlpR, promoter elements, and posttranscriptional processing involved in fructose-induced activation of the phosphoenolpyruvate-dependent sugar phosphotransferase system in Haloferax mediterranei.Adaptation of cells to new environments.Archaeal RNA polymerase and transcription regulation.Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales.Cis-regulatory logic in archaeal transcription.Regulatory multidimensionality of gas vesicle biogenesis in Halobacterium salinarum NRC-1 Same same but different: The evolution of TBP in archaea and their eukaryotic offspring

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General transcription factor specified global gene regulation in archaea

http://www.wikidata.org/entity/Q35721656

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General transcription factor specified global gene regulation in archaea

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General transcription factor specified global gene regulation in archaea

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General transcription factor specified global gene regulation in archaea

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General transcription factor specified global gene regulation in archaea

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General transcription factor specified global gene regulation in archaea

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General transcription factor specified global gene regulation in archaea

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Proceedings of the National Academy of Sciences of the United States of America

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General transcription factor specified global gene regulation in archaea

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Alok Srivastava

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Amardeep Kaur

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David J Reiss

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Leroy E Hood

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Madhavi Vuthoori

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Marc T Facciotti

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Min Pan

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Nitin S Baliga

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Paul Shannon

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Richard Bonneau

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Genome sequence of Halobacterium species NRC-1

Methanogenic Archaea and human periodontal disease

Multiple sequence alignment with the Clustal series of programs

Environmental genome shotgun sequencing of the Sargasso Sea

Genome-wide location and function of DNA binding proteins

Correlation between protein and mRNA abundance in yeast

A statistical model for identifying proteins by tandem mass spectrometry

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine op

Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data.

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