Evolutionary origins of transcription factor binding site clusters
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Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expressionMechanisms of mutational robustness in transcriptional regulationThe Effects of Sequence Variation on Genome-wide NRF2 Binding--New Target Genes and Regulatory SNPsWhat does it take to evolve an enhancer? A simulation-based study of factors influencing the emergence of combinatorial regulationTurnover of protein phosphorylation evolving under stabilizing selectionThe dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3' UTRHybrid incompatibility arises in a sequence-based bioenergetic model of transcription factor bindingUnderstanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.Identifying transcriptional cis-regulatory modules in animal genomes.Biophysical fitness landscapes for transcription factor binding sitesModeling the relationship of epigenetic modifications to transcription factor binding.Dynamics of Transcription Factor Binding Site Evolution.Analysis of functional importance of binding sites in the Drosophila gap gene network model.A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data.In silico evolution of the Drosophila gap gene regulatory sequence under elevated mutational pressureTranscriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancersMapping yeast transcriptional networksHeterogeneity of transcription factor binding specificity models within and across cell lines.Simulations of enhancer evolution provide mechanistic insights into gene regulation.Cis-regulatory elements and human evolutionPhysical constraints determine the logic of bacterial promoter architectures.The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification.In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression.Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network.Low affinity binding site clusters confer hox specificity and regulatory robustness.Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution.Spurious transcription factor binding: non-functional or genetically redundant?Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.Mechanisms and constraints shaping the evolution of body plan segmentation.Crystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter.
P2860
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P2860
Evolutionary origins of transcription factor binding site clusters
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
Evolutionary origins of transcription factor binding site clusters
@ast
Evolutionary origins of transcription factor binding site clusters
@en
type
label
Evolutionary origins of transcription factor binding site clusters
@ast
Evolutionary origins of transcription factor binding site clusters
@en
prefLabel
Evolutionary origins of transcription factor binding site clusters
@ast
Evolutionary origins of transcription factor binding site clusters
@en
P2093
P2860
P356
P1476
Evolutionary origins of transcription factor binding site clusters
@en
P2093
Saurabh Sinha
Thyago S P C Duque
P2860
P304
P356
10.1093/MOLBEV/MSR277
P577
2011-11-10T00:00:00Z